Effective results for Psychrobacter sp. 1501(2011) (eggnog40)

Summary

Number of putative secreted proteins: 10
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 10 proteins (1 high, 9 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1002339.HMPREF9373_1475(PF00303)ER
1002339.HMPREF9373_0161(PF03400)mitochondrial
1002339.HMPREF9373_2267(PF03400)(mitochondrial)
1002339.HMPREF9373_0616(PF03400)not used
1002339.HMPREF9373_1548(PF17048)
1002339.HMPREF9373_1507(PF00303)
1002339.HMPREF9373_1501(PF00303)
1002339.HMPREF9373_1115(PF03400)not used
1002339.HMPREF9373_1320(PF14328)
1002339.HMPREF9373_1790PF07019

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================