Effective results for Pseudomonas putida S16 (eggnog40)

Summary

Number of putative secreted proteins: 698
- Predicted by EffectiveT3: 193 (high confidence), 291 (low confidence)
- Predicted by EffectiveCCBD: 21 within, 9 before, 40 behind expected region 25..70aa
- Predicted by T4SEpre: 113
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 81 proteins (24 high, 57 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1042876.PPS_4860+(PF02416)ER
1042876.PPS_4890+(PF10142)(ER)
1042876.PPS_0338+ER
1042876.PPS_0447(>)mitochondrial; (mitochondrial)
1042876.PPS_3025(PF01852)ER
1042876.PPS_0503+mitochondrial
1042876.PPS_2737+ER
1042876.PPS_0614+ER
1042876.PPS_1208+(ER)
1042876.PPS_0509(PF09619)ER; (ER)
1042876.PPS_4133+(ER); ER
1042876.PPS_1086(PF02416)ER
1042876.PPS_1085(PF02416)ER
1042876.PPS_2991(PF06039)ER
1042876.PPS_1621+ER
1042876.PPS_3175+(mitochondrial); plastid
1042876.PPS_3177+ER
1042876.PPS_3562(>)ER
1042876.PPS_2527+ER
1042876.PPS_0860(>)ER; (ER)
1042876.PPS_2988+ER
1042876.PPS_2187+ER
1042876.PPS_2743+ER
1042876.PPS_2921+(mitochondrial); (plastid)
1042876.PPS_3972(PF06039)ER
1042876.PPS_3596(PF01852)ER
1042876.PPS_2518+ER
1042876.PPS_0248(PF13488)ER
1042876.PPS_1590+ER
1042876.PPS_3746(>)ER
1042876.PPS_3903+ER
1042876.PPS_0313+(ER); (mitochondrial)
1042876.PPS_5239+ER
1042876.PPS_3340(PF13488)ER
1042876.PPS_4343(<)ER
1042876.PPS_0075(<)ER
1042876.PPS_0076+ER
1042876.PPS_1329(>)(mitochondrial)
1042876.PPS_0301+ER
1042876.PPS_0399+ER
1042876.PPS_3454+ER
1042876.PPS_0829(PF13488)ER
1042876.PPS_4537+(mitochondrial); plastid
1042876.PPS_1337+(ER); (plastid)
1042876.PPS_4449PF02371mitochondrial
1042876.PPS_1871(PF01695)mitochondrial; (mitochondrial)
1042876.PPS_2264(PF13488)ER
1042876.PPS_1640+ER; (ER)
1042876.PPS_1139+ER
1042876.PPS_4859(PF02416)ER
1042876.PPS_1860+ER
1042876.PPS_4146+(mitochondrial)
1042876.PPS_2075(<)ER
1042876.PPS_0232(>)ER
1042876.PPS_5155+(ER)
1042876.PPS_5202+ER
1042876.PPS_4284+ER
1042876.PPS_4048(PF02416)ER
1042876.PPS_3254(>)ER
1042876.PPS_0342(PF06293)ER; (ER)
1042876.PPS_1440+ER
1042876.PPS_1508(>)ER
1042876.PPS_0408+ER
1042876.PPS_3484+(ER)
1042876.PPS_0976(>)(mitochondrial)
1042876.PPS_2906+ER
1042876.PPS_2908+ER
1042876.PPS_3276(>)ER
1042876.PPS_0184+ER
1042876.PPS_3710(>)(mitochondrial)
1042876.PPS_0568(PF07678)ER
1042876.PPS_3946+ER
1042876.PPS_3998(>)ER
1042876.PPS_3994+ER
1042876.PPS_3952+ER
1042876.PPS_1684(PF06039)ER
1042876.PPS_3784+(mitochondrial); plastid
1042876.PPS_4020+ER
1042876.PPS_5250+ER
1042876.PPS_3741+ER
1042876.PPS_0547+(mitochondrial)
1042876.PPS_2466+(ER)
1042876.PPS_2522++
1042876.PPS_0339(PF06293)(mitochondrial)
1042876.PPS_1596(+)ER; (ER)
1042876.PPS_0145(+)mitochondrial
1042876.PPS_3743(+)(ER)
1042876.PPS_0322(>)(PF05598)
1042876.PPS_3169+PF02371
1042876.PPS_1896+(mitochondrial)
1042876.PPS_1891(+)(mitochondrial)
1042876.PPS_3557+PF02371
1042876.PPS_3793+plastid
1042876.PPS_2337(+)ER
1042876.PPS_0136(>)(PF05598)
1042876.PPS_3005(+)mitochondrial
1042876.PPS_0599(+)(ER)
1042876.PPS_4370+plastid
1042876.PPS_3763+(plastid)
1042876.PPS_4279+(plastid)
1042876.PPS_2700(+)(ER)
1042876.PPS_1429+(PF01695)
1042876.PPS_2423(>)(PF05598)
1042876.PPS_2425(+)(mitochondrial)
1042876.PPS_0808(PF06039)(ER)
1042876.PPS_2019+(<)
1042876.PPS_3349+(plastid)
1042876.PPS_3120+(ER)
1042876.PPS_3780+plastid
1042876.PPS_2880+(plastid)
1042876.PPS_4382(+)(mitochondrial); (plastid)
1042876.PPS_1840(+)(ER)
1042876.PPS_1117(>)(mitochondrial)
1042876.PPS_4884(+)(ER)
1042876.PPS_2254++
1042876.PPS_5260+(mitochondrial)
1042876.PPS_4625+(plastid)
1042876.PPS_0639(+)(mitochondrial); plastid
1042876.PPS_0701+plastid
1042876.PPS_2949+(ER)
1042876.PPS_1477+(ER)
1042876.PPS_1482+(ER)
1042876.PPS_5033(+)(mitochondrial); (plastid)
1042876.PPS_0358++
1042876.PPS_3641+(ER)
1042876.PPS_4047(PF02416)(mitochondrial)
1042876.PPS_4863+(mitochondrial)
1042876.PPS_3673(+)(mitochondrial)
1042876.PPS_0371+(ER)
1042876.PPS_0345(+)mitochondrial
1042876.PPS_0119+(plastid)
1042876.PPS_5054+(ER)
1042876.PPS_1021+plastid
1042876.PPS_4508(>)(PF05598)
1042876.PPS_3248+plastid
1042876.PPS_3668(>)(PF05598)
1042876.PPS_2636+(ER)
1042876.PPS_2025+(ER)
1042876.PPS_3996(+)(ER)
1042876.PPS_0967(<)+
1042876.PPS_5103(+)ER
1042876.PPS_1222++
1042876.PPS_0176+(mitochondrial)
1042876.PPS_1688(+)(ER)
1042876.PPS_3450+plastid
1042876.PPS_1035(+)ER; (ER)
1042876.PPS_4255(+)(mitochondrial); (plastid)
1042876.PPS_1766(+)(mitochondrial)
1042876.PPS_4798(+)mitochondrial
1042876.PPS_0783(>)(PF05598)
1042876.PPS_0788(>)(PF05598)
1042876.PPS_4231(+)(mitochondrial); (plastid)
1042876.PPS_1693(>)
1042876.PPS_0825+
1042876.PPS_0949+
1042876.PPS_1205(<)
1042876.PPS_5038(+)+
1042876.PPS_4250+
1042876.PPS_1376+
1042876.PPS_3184+
1042876.PPS_3205(PF05598)
1042876.PPS_4433(+)mitochondrial
1042876.PPS_1158(>)
1042876.PPS_4987+
1042876.PPS_4327(PF06293)
1042876.PPS_2559+
1042876.PPS_1768(>)
1042876.PPS_1503+
1042876.PPS_3153+
1042876.PPS_3159(>)
1042876.PPS_1501+
1042876.PPS_2770+
1042876.PPS_2778+
1042876.PPS_2016+
1042876.PPS_3781(PF05598)
1042876.PPS_2301+not used
1042876.PPS_2303(<)
1042876.PPS_1716+
1042876.PPS_2329+
1042876.PPS_5176+
1042876.PPS_0848(+)plastid
1042876.PPS_3237+
1042876.PPS_3234+
1042876.PPS_4685+
1042876.PPS_0615(>)
1042876.PPS_2781+
1042876.PPS_0217PF02371
1042876.PPS_1940+
1042876.PPS_3165+
1042876.PPS_3160(PF05598)
1042876.PPS_3995+
1042876.PPS_1372(>)
1042876.PPS_3553+
1042876.PPS_3551+
1042876.PPS_3796(>)
1042876.PPS_3792+
1042876.PPS_2680(PF01695)
1042876.PPS_3798+
1042876.PPS_2374+
1042876.PPS_3489+
1042876.PPS_0924+
1042876.PPS_2334+
1042876.PPS_0850+
1042876.PPS_1318+plastid
1042876.PPS_1538+
1042876.PPS_0133PF02371
1042876.PPS_1629+
1042876.PPS_4349(+)(mitochondrial)
1042876.PPS_0660+
1042876.PPS_0665(+)(plastid)
1042876.PPS_0168+
1042876.PPS_2196+
1042876.PPS_0182+
1042876.PPS_0634+
1042876.PPS_2364+
1042876.PPS_1122PF02371
1042876.PPS_0862(>)
1042876.PPS_2212(>)
1042876.PPS_2210+
1042876.PPS_4596+
1042876.PPS_4759(+)(plastid)
1042876.PPS_1436+
1042876.PPS_1434(+)+
1042876.PPS_1431+
1042876.PPS_3363(PF05598)
1042876.PPS_0056+
1042876.PPS_0694+
1042876.PPS_4974+
1042876.PPS_4971+
1042876.PPS_0473(+)+
1042876.PPS_3108+
1042876.PPS_2183+
1042876.PPS_2182PF02371
1042876.PPS_3617+
1042876.PPS_2742+
1042876.PPS_4096+
1042876.PPS_3024+
1042876.PPS_3806+
1042876.PPS_3774+
1042876.PPS_2359(+)plastid
1042876.PPS_2353+
1042876.PPS_1872(+)(plastid)
1042876.PPS_5078+
1042876.PPS_0259+
1042876.PPS_2224+
1042876.PPS_4586(PF01695)
1042876.PPS_1427+
1042876.PPS_4965+
1042876.PPS_4962+
1042876.PPS_1078(PF01129)
1042876.PPS_1170(+)(PF09619)
1042876.PPS_0487+
1042876.PPS_4438+
1042876.PPS_2735PF02371
1042876.PPS_2731PF02371
1042876.PPS_0864+
1042876.PPS_2644+
1042876.PPS_3749+
1042876.PPS_3740(PF04488)
1042876.PPS_2340+
1042876.PPS_5242+
1042876.PPS_5193+
1042876.PPS_1291PF02371
1042876.PPS_1452(+)(<)
1042876.PPS_1453(PF06293)
1042876.PPS_2968PF02371
1042876.PPS_0079+
1042876.PPS_2502+
1042876.PPS_1328(+)(plastid)
1042876.PPS_0254(>)
1042876.PPS_0250+
1042876.PPS_3290+
1042876.PPS_3292+
1042876.PPS_0309+
1042876.PPS_1851+
1042876.PPS_3783+
1042876.PPS_3632PF02371
1042876.PPS_3785+
1042876.PPS_0223+
1042876.PPS_3934+
1042876.PPS_2240(+)(mitochondrial)
1042876.PPS_2082+
1042876.PPS_4116+
1042876.PPS_2085+
1042876.PPS_4765+
1042876.PPS_4169+
1042876.PPS_0391+
1042876.PPS_5019+
1042876.PPS_4545PF02371
1042876.PPS_1064+
1042876.PPS_4385+
1042876.PPS_1711PF02371
1042876.PPS_0712+
1042876.PPS_0716+
1042876.PPS_3136+
1042876.PPS_3132(+)(mitochondrial)
1042876.PPS_4833+
1042876.PPS_0538+
1042876.PPS_2726+not used
1042876.PPS_2664+
1042876.PPS_2255+
1042876.PPS_2094+
1042876.PPS_4716+
1042876.PPS_4712(>)
1042876.PPS_5178+
1042876.PPS_2382(PF00926)
1042876.PPS_2894+
1042876.PPS_1270(>)
1042876.PPS_1275+
1042876.PPS_0381+
1042876.PPS_0015+
1042876.PPS_0635(PF01695)
1042876.PPS_0708+
1042876.PPS_0707(+)+
1042876.PPS_4847+
1042876.PPS_2414+
1042876.PPS_0525(PF00926)
1042876.PPS_1478+
1042876.PPS_2704+
1042876.PPS_3739(+)(PF04488)
1042876.PPS_3738+
1042876.PPS_4065+
1042876.PPS_2670(+)(mitochondrial)
1042876.PPS_2673+
1042876.PPS_3939+
1042876.PPS_0835+
1042876.PPS_0834(+)(<)
1042876.PPS_0833+
1042876.PPS_4701(+)+
1042876.PPS_3067+
1042876.PPS_5035+
1042876.PPS_5032+
1042876.PPS_4037+
1042876.PPS_4038+not used
1042876.PPS_1732+
1042876.PPS_0735+
1042876.PPS_4852+
1042876.PPS_4851+
1042876.PPS_0513(PF00926)
1042876.PPS_4145+
1042876.PPS_3397(PF01695)
1042876.PPS_0819(>)
1042876.PPS_3649+
1042876.PPS_0626+
1042876.PPS_1130+
1042876.PPS_2279+
1042876.PPS_0108+
1042876.PPS_3891+
1042876.PPS_1123+
1042876.PPS_2858(>)
1042876.PPS_2857+
1042876.PPS_2299(PF01695)
1042876.PPS_1313(+)(plastid)
1042876.PPS_0517+
1042876.PPS_5021+
1042876.PPS_4042+not used
1042876.PPS_4496(+)+
1042876.PPS_3251(+)(mitochondrial)
1042876.PPS_3099PF02371
1042876.PPS_1163+
1042876.PPS_4999PF02371
1042876.PPS_3092+
1042876.PPS_0721+
1042876.PPS_0341(PF06293)
1042876.PPS_3670(PF01695)
1042876.PPS_3677PF02371
1042876.PPS_1681+not used
1042876.PPS_3678(>)
1042876.PPS_2925(+)(plastid)
1042876.PPS_1815+
1042876.PPS_1811+
1042876.PPS_3712+
1042876.PPS_4360+
1042876.PPS_2040(PF01695)
1042876.PPS_4729+
1042876.PPS_4723+
1042876.PPS_5125+
1042876.PPS_0221+
1042876.PPS_3503+
1042876.PPS_5059+
1042876.PPS_5056+
1042876.PPS_5012+
1042876.PPS_1759(+)plastid
1042876.PPS_1755+
1042876.PPS_4471+
1042876.PPS_1146+
1042876.PPS_0407(+)(>)
1042876.PPS_5133+
1042876.PPS_5130+
1042876.PPS_4445+
1042876.PPS_3982+
1042876.PPS_3500(+)(mitochondrial)
1042876.PPS_3505+
1042876.PPS_4040(PF01695)
1042876.PPS_0974+
1042876.PPS_0978(>)
1042876.PPS_2836+
1042876.PPS_1237(PF01695)
1042876.PPS_5042+
1042876.PPS_3273(PF00926)
1042876.PPS_1169(+)(PF09619)
1042876.PPS_2407+
1042876.PPS_4888PF02371
1042876.PPS_4661+
1042876.PPS_0363+
1042876.PPS_0129+
1042876.PPS_0416+
1042876.PPS_0414PF02371
1042876.PPS_2584+
1042876.PPS_2583+
1042876.PPS_2634+
1042876.PPS_0508(+)(plastid)
1042876.PPS_0542+
1042876.PPS_3466+not used
1042876.PPS_0549+
1042876.PPS_2024+
1042876.PPS_3990+
1042876.PPS_3862(>)
1042876.PPS_4214+
1042876.PPS_2717+
1042876.PPS_5106+
1042876.PPS_4672(>)
1042876.PPS_4679PF02371
1042876.PPS_5219+
1042876.PPS_3823+
1042876.PPS_4079+
1042876.PPS_3277+
1042876.PPS_4071+
1042876.PPS_1576+
1042876.PPS_0085PF02371
1042876.PPS_1658+
1042876.PPS_2070+
1042876.PPS_0795+
1042876.PPS_4089(PF01695)
1042876.PPS_1674+
1042876.PPS_1109+
1042876.PPS_1043+
1042876.PPS_1824+
1042876.PPS_4735+
1042876.PPS_1820(+)(plastid)
1042876.PPS_0552+
1042876.PPS_3041+
1042876.PPS_4104+
1042876.PPS_1771(+)(mitochondrial)
1042876.PPS_0732(+)(mitochondrial)
1042876.PPS_0885PF02371
1042876.PPS_3858PF02371
1042876.PPS_0340(PF06293)
1042876.PPS_0952+
1042876.PPS_3188(>)
1042876.PPS_5205(+)+
1042876.PPS_5206+
1042876.PPS_4885(+)(mitochondrial)
1042876.PPS_0064+
1042876.PPS_3742+
1042876.PPS_5065+
1042876.PPS_3214+
1042876.PPS_4151+
1042876.PPS_2855+
1042876.PPS_3327+
1042876.PPS_0061+
1042876.PPS_2296+
1042876.PPS_2800+
1042876.PPS_0300+
1042876.PPS_0630(+)(plastid)
1042876.PPS_3035(+)+
1042876.PPS_4502+
1042876.PPS_2141PF02371
1042876.PPS_0941(+)
1042876.PPS_2959(+)
1042876.PPS_5096(+)
1042876.PPS_1553(+)
1042876.PPS_0158(+)
1042876.PPS_3336(+)
1042876.PPS_2555(+)
1042876.PPS_3029(+)
1042876.PPS_2177(+)
1042876.PPS_2581(+)
1042876.PPS_2775(+)
1042876.PPS_2304(+)
1042876.PPS_3469(+)
1042876.PPS_3943(+)
1042876.PPS_5173(+)
1042876.PPS_0931(+)
1042876.PPS_5275(+)
1042876.PPS_0842(+)
1042876.PPS_0500(+)
1042876.PPS_0141(+)
1042876.PPS_3301(+)
1042876.PPS_0212(+)
1042876.PPS_2028(+)
1042876.PPS_1946(+)
1042876.PPS_3163(+)
1042876.PPS_4622(+)
1042876.PPS_2994(+)
1042876.PPS_1539(+)
1042876.PPS_4694(+)
1042876.PPS_0137(+)
1042876.PPS_0048(+)
1042876.PPS_0685(+)
1042876.PPS_3172(+)
1042876.PPS_3819(+)
1042876.PPS_2369(+)
1042876.PPS_3586(+)
1042876.PPS_4594(+)
1042876.PPS_4202(+)
1042876.PPS_3299(+)
1042876.PPS_1186(+)
1042876.PPS_4632(+)
1042876.PPS_3362(+)
1042876.PPS_3368(+)
1042876.PPS_0058(+)
1042876.PPS_0276(+)
1042876.PPS_0271(+)
1042876.PPS_0584(+)
1042876.PPS_0589(+)
1042876.PPS_2697(+)
1042876.PPS_0475(+)
1042876.PPS_0477(+)
1042876.PPS_2188(+)
1042876.PPS_1677(+)
1042876.PPS_1987(+)
1042876.PPS_1982(+)
1042876.PPS_4275(+)
1042876.PPS_0878(+)
1042876.PPS_4585(+)
1042876.PPS_2325(+)
1042876.PPS_5180(+)
1042876.PPS_1330(+)
1042876.PPS_1572(+)
1042876.PPS_4620(+)
1042876.PPS_4560(+)
1042876.PPS_0060(+)
1042876.PPS_4967(+)
1042876.PPS_4960(+)
1042876.PPS_0641(+)
1042876.PPS_4627(+)
1042876.PPS_0567(+)
1042876.PPS_4899(+)
1042876.PPS_3900(+)
1042876.PPS_2236(+)
1042876.PPS_2777(+)
1042876.PPS_1290(+)
1042876.PPS_0579(+)
1042876.PPS_3549(+)
1042876.PPS_0650(+)
1042876.PPS_4959(+)
1042876.PPS_2435(+)
1042876.PPS_4201(+)
1042876.PPS_0490(+)
1042876.PPS_3636(+)
1042876.PPS_3633(+)
1042876.PPS_3423(+)
1042876.PPS_2244(+)
1042876.PPS_2245(+)
1042876.PPS_2249(+)
1042876.PPS_4290(+)
1042876.PPS_4764(+)
1042876.PPS_2888(+)
1042876.PPS_2539(+)
1042876.PPS_1280(+)
1042876.PPS_0265(+)
1042876.PPS_3353(+)
1042876.PPS_4019(+)
1042876.PPS_0003(+)
1042876.PPS_2534(+)
1042876.PPS_0798(+)
1042876.PPS_1751(+)
1042876.PPS_3141(+)
1042876.PPS_3082(+)
1042876.PPS_1846(+)
1042876.PPS_1844(+)
1042876.PPS_2721(+)
1042876.PPS_1116(+)
1042876.PPS_2663(+)
1042876.PPS_3439(+)
1042876.PPS_3430(+)
1042876.PPS_2096(+)
1042876.PPS_4402(+)
1042876.PPS_4717(+)
1042876.PPS_4628(+)
1042876.PPS_4158(+)
1042876.PPS_1471(+)
1042876.PPS_1496(+)
1042876.PPS_0013(+)not used
1042876.PPS_0704(+)
1042876.PPS_1502(+)
1042876.PPS_0527(+)not used
1042876.PPS_3383(+)
1042876.PPS_2703(+)
1042876.PPS_3732(+)
1042876.PPS_3730(+)
1042876.PPS_2679(+)
1042876.PPS_2508(+)
1042876.PPS_2263(+)
1042876.PPS_3520(+)
1042876.PPS_5145(+)
1042876.PPS_5142(+)
1042876.PPS_1481(+)
1042876.PPS_1484(+)
1042876.PPS_4035(+)
1042876.PPS_4148(+)
1042876.PPS_0737(+)
1042876.PPS_0561(+)
1042876.PPS_3709(+)
1042876.PPS_1324(+)
1042876.PPS_2413(+)
1042876.PPS_1133(+)
1042876.PPS_2110(+)
1042876.PPS_2114(+)
1042876.PPS_2273(+)
1042876.PPS_2272(+)
1042876.PPS_3897(+)
1042876.PPS_3894(+)
1042876.PPS_5267(+)
1042876.PPS_2074(+)
1042876.PPS_4554(+)
1042876.PPS_4954(+)
1042876.PPS_2549(+)
1042876.PPS_3016(+)
1042876.PPS_2293(+)
1042876.PPS_3014(+)
1042876.PPS_1250(+)
1042876.PPS_1129(+)
1042876.PPS_5027(+)
1042876.PPS_3091(+)
1042876.PPS_0616(+)
1042876.PPS_3777+
1042876.PPS_0605(+)
1042876.PPS_2492(+)
1042876.PPS_1810(+)
1042876.PPS_1451(+)
1042876.PPS_3883(+)
1042876.PPS_2822(+)
1042876.PPS_3031(+)
1042876.PPS_4183(+)
1042876.PPS_1025(+)
1042876.PPS_3245(+)
1042876.PPS_0758(+)
1042876.PPS_2440(+)not used
1042876.PPS_2446(+)
1042876.PPS_2598(+)
1042876.PPS_1931(+)
1042876.PPS_2139(+)
1042876.PPS_4280(+)
1042876.PPS_0623(+)
1042876.PPS_2605(+)
1042876.PPS_0970(+)
1042876.PPS_0979(+)
1042876.PPS_0296(+)
1042876.PPS_4663(+)
1042876.PPS_2837(+)
1042876.PPS_1230(+)
1042876.PPS_0298(+)
1042876.PPS_5045(+)
1042876.PPS_4068(+)
1042876.PPS_1560(+)
1042876.PPS_1565(+)
1042876.PPS_3145(+)
1042876.PPS_1160(+)
1042876.PPS_3194(+)
1042876.PPS_2458(+)
1042876.PPS_3691(+)
1042876.PPS_1909(+)
1042876.PPS_3467(+)
1042876.PPS_3465(+)
1042876.PPS_0980(+)
1042876.PPS_1364(+)
1042876.PPS_3513(+)
1042876.PPS_0960(+)
1042876.PPS_4675(+)
1042876.PPS_1342(+)
1042876.PPS_1228(+)
1042876.PPS_2802(+)
1042876.PPS_4075(+)
1042876.PPS_4077(+)
1042876.PPS_0083(+)
1042876.PPS_1175(+)
1042876.PPS_0177(+)
1042876.PPS_0319(+)
1042876.PPS_3683(+)
1042876.PPS_0550(+)
1042876.PPS_1915(+)
1042876.PPS_0746(+)
1042876.PPS_0884(+)
1042876.PPS_2811(+)
1042876.PPS_4642(+)
1042876.PPS_4577(+)
1042876.PPS_0709(+)
1042876.PPS_0784(+)
1042876.PPS_0540(+)
1042876.PPS_3140(+)
1042876.PPS_4245(+)
1042876.PPS_4543(+)
1042876.PPS_3840(+)
1042876.PPS_0893(+)
1042876.PPS_0706(+)
1042876.PPS_3927(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.4 (4/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.5 (12/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================