Effective results for Synechocystis sp. PCC 6803 (eggnog40)
Summary
Number of putative secreted proteins: 246
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 125 eukaryotic-like domains, contained in 246 proteins (5 high, 241 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 1148.SYNGTS_0143 | (PF01241) | (ER); (plastid) | |||
| 1148.SYNGTS_0493 | PF05757 | ER | |||
| 1148.SYNGTS_0567 | (PF11833) | (mitochondrial) | |||
| 1148.SYNGTS_0800 | (PF12049) | (ER) | |||
| 1148.SYNGTS_0777 | (PF01947) | (ER) | |||
| 1148.SYNGTS_2552 | (PF03652) | (mitochondrial) | |||
| 1148.SYNGTS_1183 | (PF02366) | ER; (ER) | |||
| 1148.SYNGTS_1238 | (PF09295) | ER | |||
| 1148.SYNGTS_3074 | (PF03652) | mitochondrial; (mitochondrial) | |||
| 1148.SYNGTS_1533 | (PF02507) | ER | |||
| 1148.SYNGTS_2535 | (PF11016) | ER | |||
| 1148.SYNGTS_0291 | (PF07444) | ER | |||
| 1148.SYNGTS_2508 | (PF11910) | mitochondrial | |||
| 1148.SYNGTS_2616 | (PF07444) | ER; (ER) | |||
| 1148.SYNGTS_1888 | (PF13326) | ER | |||
| 1148.SYNGTS_2512 | (PF04278) | mitochondrial | |||
| 1148.SYNGTS_2188 | (PF14622) | mitochondrial | |||
| 1148.SYNGTS_2497 | (PF05050) | mitochondrial | |||
| 1148.SYNGTS_2385 | (PF01169) | (ER) | |||
| 1148.SYNGTS_2819 | (PF00862) | ER; (ER) | |||
| 1148.SYNGTS_2817 | (PF05969) | (ER) | |||
| 1148.SYNGTS_2812 | (PF05685) | mitochondrial; (mitochondrial) | |||
| 1148.SYNGTS_1443 | (PF01789) | ER | |||
| 1148.SYNGTS_1447 | (PF11264) | (mitochondrial) | |||
| 1148.SYNGTS_2399 | (PF03092) | ER | |||
| 1148.SYNGTS_2891 | (PF01169) | ER | |||
| 1148.SYNGTS_0271 | (PF06514) | ER | |||
| 1148.SYNGTS_1903 | (PF01716) | ER | |||
| 1148.SYNGTS_1053 | (PF16639) (PF01333) | (mitochondrial) | |||
| 1148.SYNGTS_1054 | (PF08802) | mitochondrial | |||
| 1148.SYNGTS_0512 | (PF02366) | ER | |||
| 1148.SYNGTS_2226 | (PF02341) | (mitochondrial) | |||
| 1148.SYNGTS_0853 | (PF16166) | (ER) | |||
| 1148.SYNGTS_0459 | (PF02366) | (ER) | |||
| 1148.SYNGTS_0994 | (PF01737) | ER | |||
| 1148.SYNGTS_0203 | (PF06485) | ER | |||
| 1148.SYNGTS_0197 | (PF00101) | (mitochondrial) | |||
| 1148.SYNGTS_1836 | (PF05685) | (ER) | |||
| 1148.SYNGTS_1835 | (PF11152) | (ER) | |||
| 1148.SYNGTS_1549 | (PF11460) | (ER); ER | |||
| 1148.SYNGTS_1548 | (PF10716) | ER | |||
| 1148.SYNGTS_3141 | (PF12046) | ER | |||
| 1148.SYNGTS_0827 | (PF08975) | mitochondrial; (mitochondrial) | |||
| 1148.SYNGTS_2174 | (PF05421) | (plastid) | |||
| 1148.SYNGTS_0925 | (PF05685) | (ER) | |||
| 1148.SYNGTS_1210 | (PF08417) | plastid | |||
| 1148.SYNGTS_3068 | (PF00796) | ER; not used | |||
| 1148.SYNGTS_1768 | (PF01169) | (plastid) | |||
| 1148.SYNGTS_1532 | (PF01701) | ER; not used | |||
| 1148.SYNGTS_1407 | (PF05685) | (mitochondrial) | |||
| 1148.SYNGTS_0740 | (PF11347) | (plastid) | |||
| 1148.SYNGTS_0517 | (PF00284) (PF00283) | ||||
| 1148.SYNGTS_0518 | (PF00283) | ER; not used | |||
| 1148.SYNGTS_2511 | (PF04839) | (ER) | |||
| 1148.SYNGTS_1705 | (PF05050) | (ER) | |||
| 1148.SYNGTS_1052 | (PF11360) | (mitochondrial) | |||
| 1148.SYNGTS_1056 | (PF02468) | ER; not used | |||
| 1148.SYNGTS_2121 | (PF12600) | (plastid) | |||
| 1148.SYNGTS_2239 | (PF05685) | (mitochondrial) | |||
| 1148.SYNGTS_0645 | (PF07082) | (ER) | |||
| 1148.SYNGTS_2002 | (PF01609) | plastid | |||
| 1148.SYNGTS_0790 | (PF04983) | (mitochondrial) | |||
| 1148.SYNGTS_0525 | (PF05685) | (ER) | |||
| 1148.SYNGTS_2105 | (PF01609) | plastid | |||
| 1148.SYNGTS_2967 | (PF01241) | (mitochondrial) | |||
| 1148.SYNGTS_1575 | (PF13358) | ||||
| 1148.SYNGTS_1570 | (PF11909) | ||||
| 1148.SYNGTS_0550 | (PF13358) | ||||
| 1148.SYNGTS_1203 | (PF03912) | ||||
| 1148.SYNGTS_2779 | (PF13358) | ||||
| 1148.SYNGTS_2777 | (PF01609) | ||||
| 1148.SYNGTS_2773 | (PF01609) | ||||
| 1148.SYNGTS_0148 | PF03742 | not used | |||
| 1148.SYNGTS_0787 | (PF03400) | ||||
| 1148.SYNGTS_0813 | (PF09366) | ||||
| 1148.SYNGTS_1781 | (PF05542) | ||||
| 1148.SYNGTS_0499 | (PF02533) | not used | |||
| 1148.SYNGTS_1146 | (PF06298) | not used | |||
| 1148.SYNGTS_1145 | (PF12095) | ||||
| 1148.SYNGTS_0564 | (PF08855) | ||||
| 1148.SYNGTS_1367 | (PF01609) | ||||
| 1148.SYNGTS_2097 | (PF13355) | ||||
| 1148.SYNGTS_3127 | (PF08802) | ||||
| 1148.SYNGTS_3123 | (PF00124) | ||||
| 1148.SYNGTS_3121 | (PF12527) | ||||
| 1148.SYNGTS_1134 | (PF09366) | ||||
| 1148.SYNGTS_3056 | (PF06745) | ||||
| 1148.SYNGTS_0979 | (PF05685) | ||||
| 1148.SYNGTS_0373 | (PF00504) | not used | |||
| 1148.SYNGTS_0779 | (PF08853) | ||||
| 1148.SYNGTS_1199 | (PF14249) | ||||
| 1148.SYNGTS_1224 | (PF00124) | ||||
| 1148.SYNGTS_1222 | (PF13358) | ||||
| 1148.SYNGTS_2888 | (PF00124) | ||||
| 1148.SYNGTS_3112 | (PF13358) | ||||
| 1148.SYNGTS_0863 | (PF00223) | ||||
| 1148.SYNGTS_3067 | (PF02605) | ||||
| 1148.SYNGTS_0011 | (PF05685) | ||||
| 1148.SYNGTS_0905 | (PF05685) | ||||
| 1148.SYNGTS_0344 | (PF05050) | ||||
| 1148.SYNGTS_0345 | (PF05050) | ||||
| 1148.SYNGTS_1508 | (PF05685) | ||||
| 1148.SYNGTS_0581 | (PF05685) | ||||
| 1148.SYNGTS_2522 | (PF11074) | ||||
| 1148.SYNGTS_3073 | (PF11371) | ||||
| 1148.SYNGTS_0008 | (PF00124) | ||||
| 1148.SYNGTS_0178 | (PF05685) | ||||
| 1148.SYNGTS_0911 | (PF05050) | ||||
| 1148.SYNGTS_1754 | (PF13358) | ||||
| 1148.SYNGTS_0351 | (PF13358) | ||||
| 1148.SYNGTS_0359 | (PF05685) | ||||
| 1148.SYNGTS_0598 | (PF03400) | ||||
| 1148.SYNGTS_1404 | (PF13358) | ||||
| 1148.SYNGTS_1691 | (PF04983) | ||||
| 1148.SYNGTS_2200 | (PF01609) | ||||
| 1148.SYNGTS_2199 | (PF13358) | ||||
| 1148.SYNGTS_2198 | (PF01609) | ||||
| 1148.SYNGTS_2625 | (PF01609) | ||||
| 1148.SYNGTS_1346 | (PF06745) | ||||
| 1148.SYNGTS_0102 | (PF00070) | ||||
| 1148.SYNGTS_0108 | (PF13358) | ||||
| 1148.SYNGTS_1521 | (PF05685) | ||||
| 1148.SYNGTS_1414 | (PF03400) | ||||
| 1148.SYNGTS_0435 | (PF01609) | ||||
| 1148.SYNGTS_1257 | (PF03400) | ||||
| 1148.SYNGTS_2610 | (PF05685) | ||||
| 1148.SYNGTS_0361 | (PF05685) | ||||
| 1148.SYNGTS_2293 | (PF11282) | ||||
| 1148.SYNGTS_2296 | (PF13358) | ||||
| 1148.SYNGTS_2270 | (PF13358) | ||||
| 1148.SYNGTS_2472 | (PF10999) | ||||
| 1148.SYNGTS_2478 | (PF05685) | ||||
| 1148.SYNGTS_2878 | (PF12204) | ||||
| 1148.SYNGTS_0111 | (PF02531) | ||||
| 1148.SYNGTS_0609 | (PF05685) | ||||
| 1148.SYNGTS_1732 | (PF13358) | ||||
| 1148.SYNGTS_1889 | (PF14622) | ||||
| 1148.SYNGTS_0286 | (PF05685) | ||||
| 1148.SYNGTS_0734 | (PF05685) | ||||
| 1148.SYNGTS_1468 | (PF01609) | ||||
| 1148.SYNGTS_1469 | (PF13358) | ||||
| 1148.SYNGTS_1397 | (PF05685) | ||||
| 1148.SYNGTS_1911 | (PF05685) | ||||
| 1148.SYNGTS_0426 | (PF04483) | ||||
| 1148.SYNGTS_2516 | (PF02943) | ||||
| 1148.SYNGTS_2513 | (PF01094) | ||||
| 1148.SYNGTS_2261 | (PF13358) | ||||
| 1148.SYNGTS_2265 | (PF05685) | ||||
| 1148.SYNGTS_2469 | (PF02941) | ||||
| 1148.SYNGTS_0124 | (PF13358) | ||||
| 1148.SYNGTS_0634 | (PF00504) | ||||
| 1148.SYNGTS_1655 | (PF00124) | ||||
| 1148.SYNGTS_1474 | (PF13358) | ||||
| 1148.SYNGTS_1384 | PF16058 | ||||
| 1148.SYNGTS_0417 | (PF03040) | ||||
| 1148.SYNGTS_2071 | (PF05685) | ||||
| 1148.SYNGTS_2704 | (PF05685) | ||||
| 1148.SYNGTS_2496 | (PF05050) | ||||
| 1148.SYNGTS_3031 | (PF13358) | ||||
| 1148.SYNGTS_0136 | (PF02392) | ||||
| 1148.SYNGTS_0132 | (PF05151) | not used | |||
| 1148.SYNGTS_1718 | (PF11805) | ||||
| 1148.SYNGTS_1712 | (PF13358) | ||||
| 1148.SYNGTS_1661 | (PF02529) | not used | |||
| 1148.SYNGTS_2663 | (PF06799) | ||||
| 1148.SYNGTS_2397 | (PF12159) | ||||
| 1148.SYNGTS_2398 | (PF10693) | ||||
| 1148.SYNGTS_2800 | (PF08041) | not used | |||
| 1148.SYNGTS_2937 | (PF04455) | ||||
| 1148.SYNGTS_0097 | (PF11378) | ||||
| 1148.SYNGTS_0098 | (PF11317) | ||||
| 1148.SYNGTS_1878 | (PF05050) | ||||
| 1148.SYNGTS_0651 | (PF09353) | ||||
| 1148.SYNGTS_1704 | (PF05050) | ||||
| 1148.SYNGTS_1875 | (PF05542) | ||||
| 1148.SYNGTS_1291 | (PF05685) | ||||
| 1148.SYNGTS_1296 | (PF05050) | ||||
| 1148.SYNGTS_1055 | (PF00737) | ||||
| 1148.SYNGTS_2122 | (PF02532) | not used | |||
| 1148.SYNGTS_2017 | (PF01609) | ||||
| 1148.SYNGTS_2018 | (PF01609) | ||||
| 1148.SYNGTS_2230 | (PF01609) | ||||
| 1148.SYNGTS_2836 | (PF12617) | ||||
| 1148.SYNGTS_2348 | (PF06596) | not used | |||
| 1148.SYNGTS_0323 | (PF05685) | ||||
| 1148.SYNGTS_0880 | (PF01609) | ||||
| 1148.SYNGTS_1841 | (PF07720) | ||||
| 1148.SYNGTS_0260 | (PF05685) | ||||
| 1148.SYNGTS_0513 | (PF04481) | ||||
| 1148.SYNGTS_1029 | (PF00504) | ||||
| 1148.SYNGTS_0519 | PF02419 | not used | |||
| 1148.SYNGTS_2227 | (PF00101) | ||||
| 1148.SYNGTS_0895 | (PF00504) | ||||
| 1148.SYNGTS_0076 | (PF03130) | ||||
| 1148.SYNGTS_1873 | (PF01609) | ||||
| 1148.SYNGTS_0671 | (PF04755) | ||||
| 1148.SYNGTS_0675 | (PF10063) | ||||
| 1148.SYNGTS_0216 | (PF10674) | ||||
| 1148.SYNGTS_0210 | (PF03040) | ||||
| 1148.SYNGTS_1610 | (PF05685) | ||||
| 1148.SYNGTS_1858 | (PF10664) | ||||
| 1148.SYNGTS_0180 | (PF08847) | ||||
| 1148.SYNGTS_0181 | (PF03130) | ||||
| 1148.SYNGTS_2460 | (PF11623) | not used | |||
| 1148.SYNGTS_1107 | (PF03130) | ||||
| 1148.SYNGTS_1920 | (PF11210) | ||||
| 1148.SYNGTS_1580 | (PF01609) | ||||
| 1148.SYNGTS_1589 | (PF05685) | ||||
| 1148.SYNGTS_0523 | (PF01609) | ||||
| 1148.SYNGTS_0520 | (PF01788) | not used | |||
| 1148.SYNGTS_1036 | (PF05685) | ||||
| 1148.SYNGTS_1327 | (PF05685) | ||||
| 1148.SYNGTS_1326 | (PF13358) | ||||
| 1148.SYNGTS_2104 | (PF01609) | ||||
| 1148.SYNGTS_2036 | (PF06745) | ||||
| 1148.SYNGTS_3161 | (PF01744) | ||||
| 1148.SYNGTS_0997 | (PF13358) | ||||
| 1148.SYNGTS_0331 | (PF05685) | ||||
| 1148.SYNGTS_0330 | (PF05685) | ||||
| 1148.SYNGTS_1132 | PF10241 | ||||
| 1148.SYNGTS_1480 | (PF05050) | ||||
| 1148.SYNGTS_0586 | (PF04755) | ||||
| 1148.SYNGTS_1001 | (PF08854) | ||||
| 1148.SYNGTS_1559 | (PF13358) | ||||
| 1148.SYNGTS_0533 | (PF05685) | ||||
| 1148.SYNGTS_0864 | (PF00223) | ||||
| 1148.SYNGTS_2028 | (PF13358) | ||||
| 1148.SYNGTS_2196 | (PF01609) | ||||
| 1148.SYNGTS_1421 | (PF03982) | ||||
| 1148.SYNGTS_3158 | (PF11267) | ||||
| 1148.SYNGTS_2976 | (PF12899) | ||||
| 1148.SYNGTS_1637 | (PF12452) | ||||
| 1148.SYNGTS_0305 | (PF11947) | ||||
| 1148.SYNGTS_0388 | (PF13358) | ||||
| 1148.SYNGTS_1122 | (PF11341) | ||||
| 1148.SYNGTS_1949 | (PF10184) | ||||
| 1148.SYNGTS_0319 | (PF05685) | ||||
| 1148.SYNGTS_2169 | (PF01405) | not used | |||
| 1148.SYNGTS_2780 | (PF13358) | ||||
| 1148.SYNGTS_0040 | (PF03912) | ||||
| 1148.SYNGTS_0042 | (PF13358) | ||||
| 1148.SYNGTS_1808 | (PF02427) | ||||
| 1148.SYNGTS_1797 | (PF01609) | ||||
| 1148.SYNGTS_0313 | (PF05685) | ||||
| 1148.SYNGTS_1150 | (PF06485) | ||||
| 1148.SYNGTS_1153 | (PF01609) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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