Effective results for Prochlorococcus marinus str. AS9601 (eggnog40)

Summary

Number of putative secreted proteins: 104
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 88 eukaryotic-like domains, contained in 104 proteins (8 high, 96 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
146891.A9601_07091(PF16166)ER
146891.A9601_05571(PF11016)ER
146891.A9601_05641(PF13326)mitochondrial
146891.A9601_12551(PF00283)ER
146891.A9601_05171(PF16639) (PF01333)(mitochondrial)
146891.A9601_18531(PF01737)ER
146891.A9601_05241(PF02507)ER
146891.A9601_08591(PF12452)ER
146891.A9601_03391(PF00421)(mitochondrial)
146891.A9601_15581(PF02544)(ER)
146891.A9601_06261(PF10716)ER
146891.A9601_02491(PF01716)(mitochondrial); (plastid)
146891.A9601_12041(PF01789)ER
146891.A9601_01291(PF05421)(ER); (plastid)
146891.A9601_09971(PF11152)ER
146891.A9601_07501(PF00504)ER
146891.A9601_17901(PF12046)ER
146891.A9601_06271(PF11460)ER
146891.A9601_12431PF02468ER
146891.A9601_10481(PF06799)(ER)
146891.A9601_03411(PF05151)ER; not used
146891.A9601_03201(PF00284) (PF00283)
146891.A9601_03211(PF00283)(ER); not used
146891.A9601_02741PF02468ER; not used
146891.A9601_02751(PF02532)ER; not used
146891.A9601_02731(PF00737)(mitochondrial)
146891.A9601_14861(PF13355)
146891.A9601_08021(PF11264)
146891.A9601_13061(PF00504)not used
146891.A9601_03221PF02419not used
146891.A9601_06761(PF07082)
146891.A9601_06781(PF01744)
146891.A9601_11191(PF04755)
146891.A9601_01251(PF12095)
146891.A9601_02531(PF04483)
146891.A9601_17281(PF00223)
146891.A9601_03231(PF01788)
146891.A9601_12231(PF06298)not used
146891.A9601_16881(PF04983)
146891.A9601_09661(PF11360)
146891.A9601_07221(PF12049)
146891.A9601_00791(PF11969)
146891.A9601_08051(PF11347)
146891.A9601_18011(PF05996)
146891.A9601_03111PF00493
146891.A9601_17701PF10999
146891.A9601_15251(PF11317)
146891.A9601_05191(PF11267)
146891.A9601_17241(PF00796)not used
146891.A9601_18141(PF11623)
146891.A9601_18851(PF01947)
146891.A9601_13571(PF08854)
146891.A9601_16871(PF04983)
146891.A9601_17271(PF00223)
146891.A9601_09751(PF09353)
146891.A9601_11101(PF04755)
146891.A9601_08011PF03742not used
146891.A9601_13631(PF00421)
146891.A9601_17671(PF12617)
146891.A9601_06871(PF13455)
146891.A9601_18021(PF05996)
146891.A9601_10241(PF11210)
146891.A9601_17851(PF02531)
146891.A9601_02761(PF12600)
146891.A9601_17661(PF11909)
146891.A9601_03381(PF01405)not used
146891.A9601_12121(PF10674)
146891.A9601_04411(PF08853)
146891.A9601_01391(PF11910)
146891.A9601_03551(PF02427)
146891.A9601_13351(PF00421)
146891.A9601_17231(PF02605)
146891.A9601_16491(PF11805)
146891.A9601_12791PF10999
146891.A9601_06811(PF09493)
146891.A9601_15161(PF00504)
146891.A9601_02941(PF02533)not used
146891.A9601_15301(PF08855)
146891.A9601_09571(PF10693)
146891.A9601_07531(PF09493)
146891.A9601_08081(PF05996)
146891.A9601_09561(PF12159)
146891.A9601_13331(PF02392)
146891.A9601_01621(PF10664)
146891.A9601_12861PF10999
146891.A9601_02821(PF11378)
146891.A9601_00761(PF00504)
146891.A9601_06831(PF00421)
146891.A9601_13651(PF13911)
146891.A9601_01631(PF11371)
146891.A9601_07191(PF11833)
146891.A9601_16421(PF04839)
146891.A9601_09161(PF11947)
146891.A9601_09291(PF11282)
146891.A9601_16991(PF11998)
146891.A9601_03511(PF12899)
146891.A9601_00741(PF06596)
146891.A9601_10171(PF04483)
146891.A9601_13291(PF08041)not used
146891.A9601_08541(PF12527)
146891.A9601_03651(PF01786)
146891.A9601_16751(PF11341)
146891.A9601_11631(PF02529)not used
146891.A9601_18591(PF04481)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================