Effective results for Francisella tularensis subsp. tularensis SCHU S4 (eggnog40)

Summary

Number of putative secreted proteins: 72
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 72 proteins (46 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
177416.FTT_0686c(PF00854)ER
177416.FTT_1046c(PF04193)ER
177416.FTT_0256c(PF05686)mitochondrial
177416.FTT_1688(PF03222)mitochondrial
177416.FTT_1126(PF03222)ER
177416.FTT_1510c(PF03222)ER; (ER)
177416.FTT_1253(PF00854)ER; (ER)
177416.FTT_0651(PF00854)mitochondrial; (mitochondrial)
177416.FTT_0877c(PF04193)mitochondrial
177416.FTT_1233c(PF00854)ER
177416.FTT_1502(PF03222)ER
177416.FTT_1732c(PF03222)ER
177416.FTT_0242(PF09419)mitochondrial
177416.FTT_1342(PF02931)ER
177416.FTT_1005c(PF00854)ER
177416.FTT_0354(PF04488)(ER)
177416.FTT_0350(PF01000) (PF01193)
177416.FTT_0378c(PF04488)(ER)
177416.FTT_1668(PF03222)(ER)
177416.FTT_0953c(PF00854)(ER)
177416.FTT_1263c(PF04488)(ER)
177416.FTT_1442c(PF01000) (PF01193)
177416.FTT_0352PF13358
177416.FTT_1142cPF13358
177416.FTT_0779PF13358
177416.FTT_0572(PF00854)
177416.FTT_0822PF13358
177416.FTT_1427PF13358
177416.FTT_0171PF13358
177416.FTT_0216PF13358
177416.FTT_0363PF13358
177416.FTT_1548PF13358
177416.FTT_1780PF13358
177416.FTT_0098cPF13358
177416.FTT_0377PF13358
177416.FTT_1232PF13358
177416.FTT_0357cPF13358
177416.FTT_1599cPF13358
177416.FTT_0722cPF13358
177416.FTT_0513cPF13358
177416.FTT_0131cPF13358
177416.FTT_0712c(PF03222)
177416.FTT_1481cPF13358
177416.FTT_0355cPF13358
177416.FTT_1742cPF13358
177416.FTT_1669PF13358
177416.FTT_1262PF13358
177416.FTT_0004cPF13358
177416.FTT_1692PF13358
177416.FTT_1065cPF13358
177416.FTT_1756cPF13358
177416.FTT_1265cPF13358
177416.FTT_1363cPF13358
177416.FTT_1697cPF13358
177416.FTT_1074PF13358
177416.FTT_0253cPF13358
177416.FTT_1718cPF13358
177416.FTT_0446(PF00854)
177416.FTT_1620PF13358
177416.FTT_0848(PF10013)not used
177416.FTT_1584cPF13358
177416.FTT_0273PF13358
177416.FTT_1386PF13358
177416.FTT_0226cPF13358
177416.FTT_1210cPF13358
177416.FTT_0561PF13358
177416.FTT_1615PF13358
177416.FTT_0920PF13358
177416.FTT_0247PF13358
177416.FTT_0440cPF13358
177416.FTT_0765PF13358
177416.FTT_0692cPF13358

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.125 (1/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================