Effective results for Nocardioides sp. JS614 (eggnog40)

Summary

Number of putative secreted proteins: 74
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 74 proteins (3 high, 71 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
196162.Noca_4057PF13895ER
196162.Noca_1775(PF14378)(ER)
196162.Noca_1167(PF00941)mitochondrial; (mitochondrial)
196162.Noca_4273(PF00941)(mitochondrial)
196162.Noca_2547(PF14378)mitochondrial
196162.Noca_4243(PF14378)(ER); ER
196162.Noca_1580(PF08275)(mitochondrial)
196162.Noca_0613(PF06500)(mitochondrial)
196162.Noca_1817(PF01186)ER
196162.Noca_2727(PF14378)ER
196162.Noca_1636(PF00941)(mitochondrial); plastid
196162.Noca_2425(PF02729)(mitochondrial)
196162.Noca_4153PF13574ER
196162.Noca_1998(PF03015)(ER)
196162.Noca_0594(PF00941)(ER)
196162.Noca_1461(PF06241)(mitochondrial)
196162.Noca_0436(PF14378)(ER)
196162.Noca_1489(PF00941)(ER)
196162.Noca_4143(PF01642) (PF03308)
196162.Noca_2472(PF02729)
196162.Noca_1561(PF14378)
196162.Noca_0222(PF00941)
196162.Noca_0228(PF00941)
196162.Noca_3806(PF02732)
196162.Noca_1772(PF01642)
196162.Noca_1798(PF03308)
196162.Noca_2064(PF14378)
196162.Noca_4077(PF00890)
196162.Noca_4075(PF00890)
196162.Noca_3818(PF14378)
196162.Noca_0801(PF03308)
196162.Noca_4061(PF00890)
196162.Noca_1947(PF08275)
196162.Noca_0200(PF00890)
196162.Noca_0203(PF00890)
196162.Noca_0798(PF01642)
196162.Noca_3552(PF00890)
196162.Noca_4476(PF06500)
196162.Noca_3314(PF03437)
196162.Noca_4472(PF00821)
196162.Noca_3548(PF00890)
196162.Noca_1140(PF00890)
196162.Noca_2780(PF00890)
196162.Noca_3543(PF03308)
196162.Noca_3545(PF01642)
196162.Noca_3544(PF01642)
196162.Noca_1851(PF00890)
196162.Noca_1850(PF06249)
196162.Noca_3686(PF03437)
196162.Noca_3968(PF00941)
196162.Noca_3693(PF00890)
196162.Noca_0607(PF00941)
196162.Noca_0190(PF00821)
196162.Noca_0198(PF00890)
196162.Noca_1802(PF01642)
196162.Noca_0296(PF00890)
196162.Noca_4168(PF00821)
196162.Noca_4380(PF06999)
196162.Noca_2131(PF01642)
196162.Noca_2130(PF03308)
196162.Noca_4377(PF06999)
196162.Noca_1633(PF00941)
196162.Noca_1632(PF02729)
196162.Noca_1631(PF02729)
196162.Noca_0018(PF00643)
196162.Noca_0462(PF00890)
196162.Noca_0485PF08213not used
196162.Noca_2428(PF02729)
196162.Noca_1517(PF02178)
196162.Noca_1033(PF02729)
196162.Noca_2250(PF08275)
196162.Noca_3107(PF04455)
196162.Noca_0032(PF00890)
196162.Noca_4029(PF06249)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================