Effective results for Neorickettsia sennetsu str. Miyayama (eggnog40)

Summary

Number of putative secreted proteins: 33
- Predicted by T4SEpre: 43
- Predicted by EffectiveELD: 1 eukaryotic-like domains, contained in 1 proteins (1 high, 0 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
222891.NSE_0664+ER
222891.NSE_0490+(mitochondrial); mitochondrial
222891.NSE_0104+ER
222891.NSE_0650+ER
222891.NSE_0423+ER
222891.NSE_0929+(mitochondrial)
222891.NSE_0398PF02326ER; (ER)
222891.NSE_0857+mitochondrial
222891.NSE_0847+ER
222891.NSE_0647+
222891.NSE_0015+
222891.NSE_0408+
222891.NSE_0019+
222891.NSE_0796+
222891.NSE_0539+
222891.NSE_0904+
222891.NSE_0879+
222891.NSE_0057+
222891.NSE_0376+
222891.NSE_0957+
222891.NSE_0508+
222891.NSE_0823+
222891.NSE_0467+
222891.NSE_0869+
222891.NSE_0041+
222891.NSE_0313+
222891.NSE_0068+
222891.NSE_0438+
222891.NSE_0444+
222891.NSE_0607+
222891.NSE_0605+
222891.NSE_0299+
222891.NSE_0844+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.3 (13/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================