Effective results for Marinobacter adhaerens HP15 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 30 proteins (1 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
225937.HP15_3239(PF06241)mitochondrial
225937.HP15_2607(PF14870)ER
225937.HP15_3089(PF00209)ER
225937.HP15_3411(PF13857)ER
225937.HP15_2406(PF10996)mitochondrial
225937.HP15_1067(PF14870)ER
225937.HP15_2720PF04387ER
225937.HP15_9(PF14870)mitochondrial; (mitochondrial)
225937.HP15_2864(PF14832)plastid
225937.HP15_2716(PF12483)(ER)
225937.HP15_2469(PF02130)not used
225937.HP15_2468(PF02130)
225937.HP15_1010(PF00209)
225937.HP15_810(PF03015)
225937.HP15_2624(PF00209)
225937.HP15_3393(PF12038)
225937.HP15_2380(PF10996)
225937.HP15_1859(PF11815)
225937.HP15_3916(PF00209)
225937.HP15_1198(PF09588)
225937.HP15_3292(PF13875)
225937.HP15_857(PF00209)
225937.HP15_3838(PF13857)
225937.HP15_4022(PF14870)
225937.HP15_1090(PF09588)
225937.HP15_131(PF09588)
225937.HP15_1324(PF10996)
225937.HP15_1593(PF11815)
225937.HP15_4137(PF16983)
225937.HP15_1205(PF13857)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.625 (13/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================