Effective results for Pseudoalteromonas sp. SM9913 (eggnog40)

Summary

Number of putative secreted proteins: 34
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 34 proteins (3 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
234831.PSM_A0019(PF13202) PF00036ER
234831.PSM_A0021(PF13202) PF00036ER
234831.PSM_A1389(PF13127)ER
234831.PSM_A0018(PF13202)ER; (ER)
234831.PSM_B0373(PF00883)(mitochondrial); (plastid)
234831.PSM_B0418(PF16187)ER
234831.PSM_A0020(PF13202)ER; (ER)
234831.PSM_A1563(PF01117)ER
234831.PSM_A1365(PF13202)ER
234831.PSM_A1085(PF13202)ER
234831.PSM_A1086(PF13202)ER
234831.PSM_A1087(PF13202)ER
234831.PSM_A2445PF10591ER
234831.PSM_A1515(PF00883)ER
234831.PSM_A1129(PF09317)ER
234831.PSM_A1101(PF09317)ER
234831.PSM_B0114(PF13582)(mitochondrial)
234831.PSM_A1236(PF06315)(mitochondrial)
234831.PSM_A2385(PF07693)
234831.PSM_A2477(PF12576)
234831.PSM_B0445(PF09317)
234831.PSM_A0687(PF00883)
234831.PSM_B0321(PF10354)
234831.PSM_A2450(PF00883)
234831.PSM_A2032(PF13661)
234831.PSM_A2443(PF13202)
234831.PSM_A3016(PF11969)
234831.PSM_A0634(PF00883)
234831.PSM_A1042(PF16187)
234831.PSM_A1686(PF06315)
234831.PSM_A2619(PF07693)
234831.PSM_A1643(PF02460)
234831.PSM_B0166(PF13875)not used
234831.PSM_A3092(PF07693)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================