Effective results for Helicobacter hepaticus ATCC 51449 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 19 proteins (1 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
235279.HH1064(PF03595)ER; (ER)
235279.HH0813(PF03382)ER
235279.HH1756(PF09511)mitochondrial; (mitochondrial)
235279.HH0016(PF03382)ER
235279.HH0202(PF03595)ER
235279.HH0857(PF03382)
235279.HH0050(PF03382)
235279.HH0305(PF03382)
235279.HH0730(PF03382)
235279.HH1475(PF03595)
235279.HH0540PF03269
235279.HH0328(PF04305)
235279.HH0648(PF05686)
235279.HH1512(PF04305)
235279.HH0069(PF01531)
235279.HH0201(PF03595)
235279.HH0847(PF03382)
235279.HH1302(PF03382)
235279.HH0072(PF01531)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.5 (4/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================