Effective results for Rickettsia typhi str. Wilmington (eggnog40)

Summary

Number of putative secreted proteins: 44
- Predicted by T4SEpre: 38
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 10 proteins (7 high, 3 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
257363.RT0188+ER
257363.RT0295(PF05637)ER
257363.RT0107PF02326(ER)
257363.RT0031+ER
257363.RT0032+ER
257363.RT0775+ER
257363.RT0092+ER
257363.RT0216+(ER); ER
257363.RT0399+ER
257363.RT0825(PF03959)ER
257363.RT0112+ER
257363.RT0758+ER
257363.RT0724PF03219(mitochondrial)
257363.RT0214+(mitochondrial)
257363.RT0340+(mitochondrial)
257363.RT0640+(mitochondrial)
257363.RT0294+
257363.RT0372+
257363.RT0474+
257363.RT0808+
257363.RT0255+
257363.RT0449+
257363.RT0362PF01369
257363.RT0366PF03219
257363.RT0405+
257363.RT0313+
257363.RT0142+
257363.RT0035+
257363.RT0670+
257363.RT0776+
257363.RT0489+
257363.RT0485+
257363.RT0486PF03219
257363.RT0079PF03219
257363.RT0552+
257363.RT0307+
257363.RT0732+
257363.RT0820+
257363.RT0606+
257363.RT0464PF03219
257363.RT0865+
257363.RT0248+
257363.RT0332+
257363.RT0723(PF09752)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.6 (16/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================