Effective results for Bdellovibrio bacteriovorus HD100 (eggnog40)

Summary

Number of putative secreted proteins: 93
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 93 proteins (22 high, 71 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
264462.Bd2644(PF00415) (PF13540)ER
264462.Bd3390(PF00415) (PF13540)ER
264462.Bd1137(PF00415) (PF13540)ER
264462.Bd1921(PF00415) (PF13540)ER
264462.Bd2630(PF00089)ER
264462.Bd0417(PF13174)ER
264462.Bd3220(PF00089)ER
264462.Bd3266PF13884ER
264462.Bd3267PF13884ER
264462.Bd2332(PF00089)(ER)
264462.Bd2486(PF13540)ER
264462.Bd0884PF13884ER
264462.Bd2923(PF00089)(ER)
264462.Bd1623PF00431 (PF13540)(mitochondrial)
264462.Bd2579(PF00147)ER
264462.Bd3840(PF13174)ER
264462.Bd3442(PF00622)ER
264462.Bd1204(PF14566)ER
264462.Bd2936(PF05090)ER
264462.Bd0635(PF13174)ER
264462.Bd1359(PF00089)ER
264462.Bd2019PF06963ER; (ER)
264462.Bd1898(PF00089)(ER)
264462.Bd3829(PF13174)ER
264462.Bd1533(PF12471)(mitochondrial)
264462.Bd3482(PF00089)ER
264462.Bd1959(PF09949)ER
264462.Bd3100(PF14237)(mitochondrial)
264462.Bd3611(PF00839)ER
264462.Bd1427(PF00112)ER
264462.Bd1043(PF00089)mitochondrial; (mitochondrial)
264462.Bd0078(PF14771)ER
264462.Bd0072(PF00089)ER
264462.Bd3551(PF05761)mitochondrial
264462.Bd1449(PF13540)ER
264462.Bd3137(PF16313)(ER)
264462.Bd2535(PF00089)ER
264462.Bd1719(PF00839)ER
264462.Bd0629(PF00089)ER
264462.Bd1712PF13884ER
264462.Bd1841(PF16313)ER
264462.Bd2711(PF13174)ER
264462.Bd2088PF13884ER
264462.Bd2548PF13884mitochondrial
264462.Bd0704PF13884ER
264462.Bd0705PF13884ER
264462.Bd0832(PF13174)ER; (ER)
264462.Bd0029PF00431ER; (ER)
264462.Bd1391(PF00089)ER
264462.Bd0607(PF16313)ER
264462.Bd1541(PF00089)ER
264462.Bd1130PF13884ER
264462.Bd0035(PF00089)ER
264462.Bd2851(PF14273)ER
264462.Bd3415(PF00089)ER
264462.Bd2474(PF09976)ER
264462.Bd1247(PF00415)mitochondrial; ER
264462.Bd2821(PF03984)ER
264462.Bd3247(PF00112)ER
264462.Bd0977(PF09949)ER
264462.Bd2582PF13884ER
264462.Bd2581(PF00147)ER
264462.Bd0564(PF00089)ER
264462.Bd3182PF13884ER
264462.Bd2937(PF05090)(ER)
264462.Bd1979(PF05090)(ER)
264462.Bd3481(PF00089)(mitochondrial)
264462.Bd2106(PF04187)(mitochondrial)
264462.Bd3409(PF09976) (PF13174)
264462.Bd1175(PF08732)
264462.Bd0312PF02527
264462.Bd2030(PF09976)
264462.Bd0437(PF05090)
264462.Bd2951(PF00163)
264462.Bd1636PF02527
264462.Bd0451(PF01980)
264462.Bd1532(PF07958)
264462.Bd0055PF00808
264462.Bd2565PF13884
264462.Bd3112(PF00163)
264462.Bd3119(PF13174)
264462.Bd3908PF02527
264462.Bd2865PF09239
264462.Bd2864PF04406
264462.Bd0706(PF00089)
264462.Bd2256(PF01980)
264462.Bd2410(PF04187)
264462.Bd3734(PF00025)
264462.Bd1641PF13884
264462.Bd1482(PF14237)
264462.Bd1731(PF01980)
264462.Bd2850(PF14273)
264462.Bd2105(PF14237)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================