Effective results for Prevotella ruminicola 23 (eggnog40)

Summary

Number of putative secreted proteins: 102
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 44 eukaryotic-like domains, contained in 102 proteins (10 high, 92 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
264731.PRU_2177				(PF16334) (PF16335) (PF17168) (PF08760)	ER
264731.PRU_1865				(PF17137) (PF01055) (PF16338)	ER
264731.PRU_1795				(PF17137) (PF01055) (PF16338)	ER
264731.PRU_2182				(PF17137) (PF01055)	ER
264731.PRU_0965				(PF13905)	ER
264731.PRU_1568				(PF10435)	ER
264731.PRU_2632				(PF13905)	ER
264731.PRU_2184				(PF17137) (PF01055) (PF16338)
264731.PRU_2520				(PF01823)	(ER); (mitochondrial)
264731.PRU_2853				PF00328	ER
264731.PRU_0011				(PF14684)	ER
264731.PRU_1167				(PF14310)	ER
264731.PRU_1168				(PF07971)	ER
264731.PRU_2053				(PF13905)	ER
264731.PRU_0006				(PF14684)	ER
264731.PRU_2609				(PF00295)	ER
264731.PRU_1461				(PF00295)	ER
264731.PRU_2710				(PF06824)	ER
264731.PRU_2711				(PF07971)	(ER)
264731.PRU_0418				(PF06964)	ER
264731.PRU_0416				(PF14310)	ER
264731.PRU_1095				(PF14684)	ER
264731.PRU_0879				PF03415	ER; (ER)
264731.PRU_2655				(PF14310)	ER
264731.PRU_1663				(PF01715)	(mitochondrial)
264731.PRU_2730				(PF14310)	ER
264731.PRU_0091				(PF01697)	ER
264731.PRU_2693				(PF14310)	ER
264731.PRU_2745				(PF01055)	ER
264731.PRU_0089				(PF04991)	(ER)
264731.PRU_1020				PF12812	ER
264731.PRU_0515				(PF01650)	ER
264731.PRU_2593				(PF07971)	ER
264731.PRU_2591				(PF07971)	ER
264731.PRU_2307				(PF00295)	ER
264731.PRU_2760				(PF00295)	ER
264731.PRU_2786				(PF14310)	ER
264731.PRU_1139				(PF04326)	(mitochondrial)
264731.PRU_1622				(PF06964)	ER
264731.PRU_1956				(PF14310)	ER
264731.PRU_2232				(PF01055)	ER
264731.PRU_2178				(PF07971)	ER
264731.PRU_2312				(PF14310)	ER
264731.PRU_2794				PF00328	ER
264731.PRU_1011				PF03415	ER
264731.PRU_1940				(PF14310)	ER
264731.PRU_0222				PF00328	ER
264731.PRU_1159				(PF07971)	ER
264731.PRU_1158				(PF06824)	ER
264731.PRU_2156				(PF13905)	ER
264731.PRU_0971				(PF05728)	(ER)
264731.PRU_0138				(PF00091) (PF12327)
264731.PRU_2003				(PF00091) (PF12327)
264731.PRU_2359				(PF00431)	plastid
264731.PRU_0313				(PF03630)	(plastid)
264731.PRU_0509				(PF00302)	(mitochondrial)
264731.PRU_2590				(PF14310)	(ER)
264731.PRU_0525				(PF06964)	(mitochondrial)
264731.PRU_1371				(PF00686)	(mitochondrial)
264731.PRU_2336				(PF00091) (PF12327)
264731.PRU_1563				PF16269
264731.PRU_1962				(PF13148)
264731.PRU_2539				(PF04991)
264731.PRU_0580				(PF13455)
264731.PRU_1165				(PF07971)
264731.PRU_1430				(PF04991)
264731.PRU_1188				(PF16473)
264731.PRU_2614				PF00328
264731.PRU_2050				(PF05728)
264731.PRU_2606				(PF06964)
264731.PRU_2460				(PF00302)
264731.PRU_1416				(PF12437)
264731.PRU_2813				(PF16473)
264731.PRU_0930				(PF11074)
264731.PRU_0114				(PF16314)
264731.PRU_1469				(PF00295)
264731.PRU_1263				(PF13905)
264731.PRU_2806				(PF13148)
264731.PRU_0129				PF07959
264731.PRU_0385				(PF15891)
264731.PRU_0384				(PF05728)
264731.PRU_1476				(PF01650)
264731.PRU_2342				(PF13905)
264731.PRU_2909				(PF04991)
264731.PRU_1665				(PF07787)
264731.PRU_2647				(PF13148)
264731.PRU_0705				(PF01715)
264731.PRU_0703				(PF02689)
264731.PRU_1058				(PF04326)
264731.PRU_2365				(PF07971)
264731.PRU_0511				(PF06964)
264731.PRU_2751				(PF00686)
264731.PRU_0188				(PF04326)
264731.PRU_0670				(PF05693)
264731.PRU_0524				(PF06964)
264731.PRU_0332				(PF02026)
264731.PRU_1009				(PF04326)
264731.PRU_0534				(PF04326)
264731.PRU_1957				(PF12437)
264731.PRU_2777				PF03415
264731.PRU_0144				(PF04326)
264731.PRU_1812				(PF14310)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================