Effective results for Cupriavidus metallidurans CH34 (eggnog40)

Summary

Number of putative secreted proteins: 104
- Predicted by T4SEpre: 68
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 45 proteins (0 high, 45 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
266264.Rmet_2016+mitochondrial; (mitochondrial)
266264.Rmet_0501(PF00162)mitochondrial; (mitochondrial)
266264.Rmet_1704(PF13441)ER
266264.Rmet_2000(PF00665)(ER)
266264.Rmet_2008(PF00665)(ER)
266264.Rmet_0980+(mitochondrial); (plastid)
266264.Rmet_3227+(mitochondrial)
266264.Rmet_2552(PF00665)(ER)
266264.Rmet_3172(PF02239)ER
266264.Rmet_3171+ER
266264.Rmet_2954+ER
266264.Rmet_1046+(mitochondrial)
266264.Rmet_3169(PF02239)ER; (ER)
266264.Rmet_2080(PF02239)ER
266264.Rmet_0993+mitochondrial; (mitochondrial)
266264.Rmet_2405(PF00665)(ER)
266264.Rmet_0483(PF00665)mitochondrial; (mitochondrial)
266264.Rmet_1264(PF00665)(mitochondrial)
266264.Rmet_2826+(ER)
266264.Rmet_3365(PF00665)mitochondrial; (mitochondrial)
266264.Rmet_2205+ER
266264.Rmet_2991(PF00665)mitochondrial
266264.Rmet_1511(PF00316)(mitochondrial)
266264.Rmet_0305+ER; (ER)
266264.Rmet_2524(PF13401)(mitochondrial)
266264.Rmet_0908+mitochondrial
266264.Rmet_3010(PF00665)mitochondrial
266264.Rmet_1507(PF00316)(mitochondrial)
266264.Rmet_2837(PF00665)(ER)
266264.Rmet_3150+ER
266264.Rmet_3331(PF02239)ER
266264.Rmet_1792+(mitochondrial)
266264.Rmet_0312+ER
266264.Rmet_2251+ER
266264.Rmet_0532+(mitochondrial)
266264.Rmet_3472(PF13441)ER
266264.Rmet_0321(PF00665)(ER)
266264.Rmet_1233+(mitochondrial); (plastid)
266264.Rmet_3142(PF00665)(ER)
266264.Rmet_0665+ER
266264.Rmet_2009(PF13401)(ER)
266264.Rmet_2284+(mitochondrial)
266264.Rmet_1714+(ER)
266264.Rmet_3141(PF13401)(ER)
266264.Rmet_2551(PF13401)(ER)
266264.Rmet_3543+(mitochondrial)
266264.Rmet_1725+(mitochondrial)
266264.Rmet_2406(PF13401)(ER)
266264.Rmet_1999(PF13401)(ER)
266264.Rmet_1280(PF00665)(mitochondrial)
266264.Rmet_2768(PF13441)plastid
266264.Rmet_2836(PF13401)(ER)
266264.Rmet_1251(PF00665)(mitochondrial)
266264.Rmet_1404+(mitochondrial)
266264.Rmet_1301(PF00665)(mitochondrial)
266264.Rmet_0320(PF13401)(ER)
266264.Rmet_2874+
266264.Rmet_2160+
266264.Rmet_0349+
266264.Rmet_0359+
266264.Rmet_2670+
266264.Rmet_2922+
266264.Rmet_1015+
266264.Rmet_2663+
266264.Rmet_2842(PF00665)
266264.Rmet_1627+
266264.Rmet_1923+
266264.Rmet_0619+
266264.Rmet_1564(PF00665)
266264.Rmet_2556(PF00665)
266264.Rmet_2135+
266264.Rmet_1557+
266264.Rmet_2382(PF00665)
266264.Rmet_2092+
266264.Rmet_0525+
266264.Rmet_1612(PF00665)
266264.Rmet_1055+
266264.Rmet_1449+
266264.Rmet_1993(PF00665)
266264.Rmet_1285+
266264.Rmet_0132+
266264.Rmet_0981+
266264.Rmet_0031(PF00665)
266264.Rmet_0854+
266264.Rmet_1529(PF00665)
266264.Rmet_0853+
266264.Rmet_1073+
266264.Rmet_1516(PF00162)
266264.Rmet_0111+
266264.Rmet_1884+
266264.Rmet_3348(PF00665)
266264.Rmet_2523+
266264.Rmet_1592(PF00665)
266264.Rmet_0057+
266264.Rmet_0875(PF00316)
266264.Rmet_2899+
266264.Rmet_2681+
266264.Rmet_3241+
266264.Rmet_2031+
266264.Rmet_3329+
266264.Rmet_3495+
266264.Rmet_1421+
266264.Rmet_0079+
266264.Rmet_3267+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.2 (12/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================