Effective results for Methylobacterium extorquens AM1 (eggnog40)

Summary

Number of putative secreted proteins: 125
- Predicted by T4SEpre: 96
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 44 proteins (1 high, 43 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
272630.MexAM1_META1p1929+ER
272630.MexAM1_META1p2203+ER
272630.MexAM1_META1p3912+(ER)
272630.MexAM1_META1p4456+ER
272630.MexAM1_META1p3228(PF01774)(mitochondrial)
272630.MexAM1_META1p2314+ER
272630.MexAM1_META1p5268(PF03209)ER
272630.MexAM1_META1p2412+(mitochondrial); (plastid)
272630.MexAM1_META1p1200(PF02683)ER
272630.MexAM1_META1p2639+ER
272630.MexAM1_META1p5039+ER
272630.MexAM1_META1p2246+ER
272630.MexAM1_META1p2646(PF02683)(ER); (plastid)
272630.MexAM1_META1p4772PF05769(mitochondrial)
272630.MexAM1_META1p2329+(ER)
272630.MexAM1_META1p1224(PF03404)ER
272630.MexAM1_META1p1227(PF03404)mitochondrial
272630.MexAM1_META1p0037+mitochondrial
272630.MexAM1_META1p0661+ER
272630.MexAM1_META1p5185+ER
272630.MexAM1_META1p1498+ER; (mitochondrial)
272630.MexAM1_META1p0234+ER; (ER)
272630.MexAM1_META1p0078(PF02683)ER
272630.MexAM1_META1p5226+(mitochondrial)
272630.MexAM1_META1p0699+mitochondrial
272630.MexAM1_META1p0690+ER
272630.MexAM1_META1p1484+(ER)
272630.MexAM1_META1p1241(PF02683)ER
272630.MexAM1_META1p1033+(mitochondrial)
272630.MexAM1_META1p2598(PF02683)ER
272630.MexAM1_META1p4984+ER
272630.MexAM1_META1p2578+ER
272630.MexAM1_META1p1587(PF08892)(mitochondrial); mitochondrial
272630.MexAM1_META1p1292+ER
272630.MexAM1_META1p3607+(ER)
272630.MexAM1_META1p2580(PF02683)ER
272630.MexAM1_META1p1265+ER
272630.MexAM1_META1p3476+(mitochondrial); (ER)
272630.MexAM1_META1p3322+mitochondrial
272630.MexAM1_META1p3369(PF11911)ER
272630.MexAM1_META1p2382+(mitochondrial)
272630.MexAM1_META1p0640+ER
272630.MexAM1_META1p0359+(ER)
272630.MexAM1_META1p0395+ER
272630.MexAM1_META1p2626(PF02683)(ER)
272630.MexAM1_META1p0971(PF10908)ER
272630.MexAM1_META1p3390+(ER); ER
272630.MexAM1_META1p3142+ER
272630.MexAM1_META1p1171+ER
272630.MexAM1_META1p2040+(ER)
272630.MexAM1_META1p4174+ER
272630.MexAM1_META1p4444+ER
272630.MexAM1_META1p1564+ER
272630.MexAM1_META1p0228+ER
272630.MexAM1_META1p2304+mitochondrial; (mitochondrial)
272630.MexAM1_META1p5224+(mitochondrial)
272630.MexAM1_META1p2979+(mitochondrial)
272630.MexAM1_META1p2558(PF02683)(ER)
272630.MexAM1_META1p2948+(mitochondrial)
272630.MexAM1_META1p0403+(mitochondrial)
272630.MexAM1_META1p0297+(ER)
272630.MexAM1_META1p4913(PF01442)
272630.MexAM1_META1p4917+
272630.MexAM1_META1p2478+
272630.MexAM1_META1p3822+
272630.MexAM1_META1p1757+
272630.MexAM1_META1p5278(PF03209)
272630.MexAM1_META1p2889+
272630.MexAM1_META1p5181(PF05532)
272630.MexAM1_META1p1330+
272630.MexAM1_META1p0489+
272630.MexAM1_META1p4921+
272630.MexAM1_META1p2427(PF08892)
272630.MexAM1_META1p0300+
272630.MexAM1_META1p0270+
272630.MexAM1_META1p0277(PF05532)
272630.MexAM1_META1p0276(PF05532)not used
272630.MexAM1_META1p0279(PF05532)
272630.MexAM1_META1p1250(PF08797)
272630.MexAM1_META1p5227+
272630.MexAM1_META1p3222(PF01730)
272630.MexAM1_META1p2126(PF05532)
272630.MexAM1_META1p2218+
272630.MexAM1_META1p1067(PF01774)
272630.MexAM1_META1p1069(PF01730)
272630.MexAM1_META1p0991(PF07250)
272630.MexAM1_META1p2804+
272630.MexAM1_META1p3331+
272630.MexAM1_META1p4187+
272630.MexAM1_META1p2906(PF14701)
272630.MexAM1_META1p0380+
272630.MexAM1_META1p3988(PF13392)
272630.MexAM1_META1p0983(PF10908)
272630.MexAM1_META1p2311+
272630.MexAM1_META1p3182+
272630.MexAM1_META1p2567(PF03404)
272630.MexAM1_META1p2120+
272630.MexAM1_META1p4852+
272630.MexAM1_META1p2855+
272630.MexAM1_META1p5285+
272630.MexAM1_META1p5288+
272630.MexAM1_META1p3945(PF13392)
272630.MexAM1_META1p4085+
272630.MexAM1_META1p1986+
272630.MexAM1_META1p2169+
272630.MexAM1_META1p2381+
272630.MexAM1_META1p1448(PF11911)
272630.MexAM1_META1p3950(PF13392)
272630.MexAM1_META1p0574(PF12513)
272630.MexAM1_META1p1741+
272630.MexAM1_META1p2710+
272630.MexAM1_META1p0978(PF01774)
272630.MexAM1_META1p0974(PF01730)
272630.MexAM1_META1p3399+
272630.MexAM1_META1p0706+
272630.MexAM1_META1p0885+
272630.MexAM1_META1p0280(PF05532)
272630.MexAM1_META1p3558(PF03404)
272630.MexAM1_META1p0829(PF10013)not used
272630.MexAM1_META1p2460(PF05532)
272630.MexAM1_META1p1561(PF08797)
272630.MexAM1_META1p0624+
272630.MexAM1_META1p2857+
272630.MexAM1_META1p0610+
272630.MexAM1_META1p1923+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.1 (1/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================