Effective results for Legionella pneumophila str. Paris (eggnog40)

Summary

Number of putative secreted proteins: 386
- Predicted by T4SEpre: 482
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 63 proteins (8 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
297246.lpp1283+(PF00314)ER
297246.lpp0469+(PF00023)ER
297246.lpp0252+ER
297246.lpp2872(PF14566)ER
297246.lpp0782+(ER)
297246.lpp0787+ER
297246.lpp0430+(ER)
297246.lpp2465+ER
297246.lpp1263+ER
297246.lpp0327+ER
297246.lpp1312+(mitochondrial)
297246.lpp2681+ER
297246.lpp1880PF01150ER
297246.lpp0134+ER
297246.lpp3071+ER
297246.lpp1085+mitochondrial; (mitochondrial)
297246.lpp2510+ER
297246.lpp2676+ER
297246.lpp1252+ER
297246.lpp0232+(mitochondrial)
297246.lpp0234+(mitochondrial)
297246.lpp1320+(mitochondrial)
297246.lpp1631+(mitochondrial)
297246.lpp1637+mitochondrial
297246.lpp1634+mitochondrial; (mitochondrial)
297246.lpp0379PF11901ER
297246.lpp1962+ER
297246.lpp0812(PF00854)(mitochondrial)
297246.lpp0361+(mitochondrial)
297246.lpp0172+ER
297246.lpp0174+ER
297246.lpp0957+ER
297246.lpp0489+ER
297246.lpp1366+mitochondrial
297246.lpp1638+ER
297246.lpp2943+ER
297246.lpp1946+ER
297246.lpp1566(PF01610)(ER)
297246.lpp0763+ER
297246.lpp1706+ER
297246.lpp1017+ER
297246.lpp0963+ER
297246.lpp1955+(mitochondrial)
297246.lpp2157+ER
297246.lpp1926(PF02112)ER
297246.lpp0034+ER
297246.lpp0859+(mitochondrial)
297246.lpp2148(PF00854)ER; (ER)
297246.lpp1490(PF00854)ER
297246.lpp1033PF01150ER
297246.lpp1156+mitochondrial
297246.lpp1935+ER
297246.lpp2174+ER
297246.lpp1557+mitochondrial; (mitochondrial)
297246.lpp1236+(mitochondrial)
297246.lpp2292+(ER)
297246.plpp0074+ER
297246.lpp0618(PF01610)ER
297246.lpp0473+ER
297246.lpp1825+ER
297246.lpp0316+(mitochondrial)
297246.lpp2740+ER
297246.lpp1108+mitochondrial
297246.lpp0319(PF01610)ER
297246.lpp0095+mitochondrial
297246.lpp1691+ER
297246.lpp2641+ER
297246.lpp1843+(ER)
297246.lpp2867+(ER)
297246.lpp1683+(PF00023)
297246.lpp1656+(mitochondrial)
297246.lpp1089(PF13427) (PF04229)
297246.lpp0350+(PF00617)
297246.lpp0233+PF00646
297246.lpp2851(PF00854)(ER)
297246.lpp2698(PF01541)(ER)
297246.lpp2690+(plastid)
297246.lpp1615+(plastid)
297246.lpp0372+(mitochondrial)
297246.lpp0576(PF04229)(ER)
297246.lpp1961+(PF04488)
297246.lpp1437+(mitochondrial)
297246.lpp1766+(ER)
297246.lpp0362+(mitochondrial)
297246.plpp0068(PF13427)(ER)
297246.lpp2887+(PF04564)
297246.lpp2591+(plastid)
297246.lpp0835+(ER)
297246.lpp0468+(mitochondrial)
297246.lpp2410(PF01610)(mitochondrial)
297246.lpp1932+PF01369
297246.lpp1939+(mitochondrial)
297246.lpp0988+(ER)
297246.lpp2933+(mitochondrial)
297246.lpp1823+(mitochondrial)
297246.lpp0269+(mitochondrial)
297246.lpp2938+(mitochondrial)
297246.lpp2061+(PF00023)
297246.lpp0071(PF01610)(mitochondrial); not used
297246.lpp1857+(mitochondrial)
297246.lpp0094+(mitochondrial)
297246.lpp2139+
297246.lpp0933+
297246.lpp1682+
297246.lpp1681+
297246.lpp1445+
297246.lpp1444+
297246.lpp1447+
297246.lpp1440+
297246.lpp2316+
297246.lpp2311(PF01610)
297246.lpp0799+
297246.lpp0429+
297246.lpp2656+
297246.lpp2491+
297246.lpp0331(PF01541)
297246.lpp0332+
297246.lpp0256+
297246.lpp0254+
297246.lpp0253+
297246.lpp0251+
297246.lpp1640+
297246.lpp1309+
297246.lpp1899+
297246.lpp2016+
297246.lpp1641(PF14701)
297246.lpp2308+
297246.lpp2300+
297246.lpp2773+
297246.lpp2276+
297246.lpp2270+
297246.lpp3004+
297246.lpp2775+
297246.lpp3009+
297246.lpp3008+
297246.lpp1090+
297246.lpp2479+
297246.lpp2461+
297246.lpp0224+
297246.lpp1882+
297246.lpp0130+
297246.lpp1154+
297246.lpp2819+
297246.lpp2062+
297246.lpp1799+
297246.lpp1790+
297246.plpp0114+
297246.lpp2202+
297246.lpp3072+
297246.lpp1642+
297246.lpp2516+
297246.lpp2517+
297246.lpp2511+
297246.lpp0688+
297246.lpp2476+
297246.lpp2472+
297246.lpp1251+
297246.lpp1253+
297246.lpp2850+
297246.lpp2852+
297246.lpp1667+
297246.lpp2076+
297246.lpp2210(PF16661)
297246.lpp1591+
297246.lpp1632+
297246.lpp2501+
297246.lpp1666+
297246.lpp0697+
297246.lpp0547+
297246.lpp0349+
297246.lpp1333(PF00854)
297246.lpp0110+
297246.lpp0117+
297246.lpp1409+
297246.lpp1404+
297246.lpp2192+
297246.lpp2194(PF12471)
297246.lpp2195(PF07958)
297246.lpp2198+
297246.lpp2225+
297246.plpp0006(PF00854)
297246.plpp0003+
297246.lpp1625+
297246.lpp2458+
297246.lpp2455+
297246.lpp2980+
297246.lpp0578+
297246.lpp1342+
297246.lpp1186+
297246.lpp0109(PF05761)
297246.lpp0108+
297246.lpp0104+
297246.lpp0100+
297246.lpp1291+
297246.lpp1967+
297246.lpp2051(PF01541)
297246.lpp2055(PF01541)
297246.lpp2059+
297246.lpp1432+
297246.lpp0811(PF01541)
297246.lpp1439+
297246.lpp1502+
297246.lpp2237+
297246.lpp3047+
297246.lpp0581+
297246.lpp2527+
297246.lpp2525(PF07700)
297246.lpp2521+
297246.lpp2428+
297246.lpp1761+
297246.lpp0360+
297246.lpp2738+
297246.plpp0069(PF04229)
297246.lpp0008+
297246.lpp0959+
297246.lpp0955(PF09265)
297246.lpp2088+
297246.lpp2082PF00646
297246.lpp2086+
297246.lpp2087+
297246.lpp1609+
297246.lpp1603PF14360
297246.lpp2555+
297246.lpp2432+
297246.lpp2888+
297246.lpp1738+
297246.lpp2889+
297246.lpp2896(PF01541)
297246.lpp1160+
297246.lpp1168+
297246.lpp2948+
297246.lpp2944+
297246.lpp2947+
297246.lpp1940+
297246.lpp1941+
297246.lpp1942+
297246.lpp1944(PF01541)
297246.lpp0012+
297246.lpp1380+
297246.lpp1381+
297246.lpp2882+
297246.lpp1561+
297246.lpp0310+
297246.lpp2095+
297246.lpp2094+
297246.lpp2093+
297246.lpp2099+
297246.lpp2444+
297246.lpp2546+
297246.lpp2402(PF01610)
297246.lpp2408+
297246.lpp1508+
297246.lpp1010+
297246.lpp1173+
297246.lpp0150+
297246.lpp2979+
297246.lpp2976+
297246.lpp1952+
297246.lpp1959+
297246.lpp0021+
297246.lpp2578+
297246.lpp2579+
297246.lpp2150+
297246.lpp2577+
297246.lpp0717(PF01541)
297246.plpp0042+
297246.lpp2572+
297246.lpp2573+
297246.lpp2417+
297246.lpp2419(PF09445)
297246.lpp1715+
297246.lpp1716+
297246.lpp0202+
297246.lpp2704+
297246.lpp1002+
297246.lpp1144(PF01541)
297246.lpp1146+
297246.lpp1149+
297246.lpp0442+
297246.lpp0140+
297246.lpp0145+
297246.lpp1658+
297246.lpp0039(PF01541)
297246.lpp0037+
297246.lpp0030+
297246.lpp1812(PF01541)
297246.lpp1818+
297246.lpp2149+
297246.lpp1546+
297246.lpp2443+
297246.lpp2360(PF16661)
297246.lpp2839+
297246.lpp2777+
297246.lpp1030+
297246.lpp1031+
297246.lpp1035(PF01610)
297246.lpp1007+
297246.lpp1006+
297246.lpp1150+
297246.lpp2607+
297246.lpp2604+
297246.lpp2605+
297246.lpp1931+
297246.lpp0047+
297246.lpp0286+
297246.lpp2175+
297246.lpp1556+
297246.lpp2286+
297246.lpp2594+
297246.lpp2592+
297246.lpp2593+
297246.lpp1486+
297246.lpp0607+
297246.lpp1025+
297246.lpp1029+
297246.lpp0748+
297246.lpp1121+
297246.lpp1125+
297246.lpp2615+
297246.lpp2544+
297246.lpp2903+
297246.lpp1147+
297246.lpp2909+
297246.lpp1833+
297246.lpp2167+
297246.lpp2166+
297246.lpp0982+
297246.lpp2587+
297246.lpp1584(PF04229)
297246.lpp0503+
297246.lpp0505+
297246.lpp1111+
297246.lpp1139+
297246.lpp1130+
297246.lpp0471+
297246.lpp0751+
297246.lpp0062+
297246.lpp2809+
297246.lpp2800+
297246.lpp2801+
297246.lpp1914+
297246.lpp0080+
297246.lpp0882(PF01541)
297246.lpp2248+
297246.lpp2249+
297246.lpp2246+
297246.lpp0750+
297246.lpp2746+
297246.lpp2745+
297246.lpp2748+
297246.lpp2066+
297246.lpp1105+
297246.lpp1100+
297246.lpp1101+
297246.lpp2637+
297246.lpp1109+
297246.lpp1852(PF01541)
297246.lpp1855+
297246.lpp2810+
297246.lpp1848+
297246.lpp2101(PF04488)
297246.lpp2104+
297246.lpp2037(PF01610)
297246.lpp2033+
297246.lpp0504+
297246.plpp0092(PF13427)
297246.lpp2325(PF07700)
297246.lpp2329+
297246.lpp2328+
297246.lpp0675+
297246.lpp2259+
297246.lpp3025(PF08123)
297246.lpp1076+
297246.lpp1676+
297246.lpp1112+
297246.lpp2644+
297246.lpp2486PF00646
297246.lpp2487+
297246.lpp2480+
297246.lpp0304+
297246.lpp0245+
297246.lpp0246+
297246.lpp1845+
297246.lpp2865+
297246.lpp2622+
297246.lpp2626+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.8 (8/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================