Effective results for Xanthomonas campestris pv. vesicatoria str. 85-10 (eggnog40)

Summary

Number of putative secreted proteins: 779
- Predicted by EffectiveT3: 217 (high confidence), 325 (low confidence)
- Predicted by EffectiveCCBD: 9 within, 12 before, 25 behind expected region 25..70aa
- Predicted by T4SEpre: 77
- Predicted by EffectiveELD: 36 eukaryotic-like domains, contained in 150 proteins (91 high, 59 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
316273.XCV3632(PF14686) (PF09284) (PF14683)mitochondrial
316273.XCV0618(PF00665) PF13276(mitochondrial); (plastid)
316273.XCV1849PF13683 PF13276mitochondrial; (mitochondrial)
316273.XCV3027(PF01431) (PF05649)ER
316273.XCV3834(PF01431) (PF05649)ER
316273.XCV2900(PF01431) (PF05649)ER
316273.XCV0439PF13683 PF13276mitochondrial
316273.XCV3432PF03080ER
316273.XCV1360+ER
316273.XCV2678(>)(mitochondrial)
316273.XCV4456+(ER)
316273.XCV1586+(ER)
316273.XCV0621(+)(PF00665)(mitochondrial)
316273.XCV4194(PF00930)ER
316273.XCV3093+(mitochondrial); (plastid)
316273.XCV3412(+)(PF00665)(mitochondrial)
316273.XCV4453+ER
316273.XCV2726(PF00930)mitochondrial
316273.XCV2600(PF01963)(mitochondrial)
316273.XCV2738(PF00930)mitochondrial
316273.XCV4158+mitochondrial; (mitochondrial)
316273.XCV2380+ER
316273.XCV0808(>)ER
316273.XCV2898(PF01431) (PF05649)(ER)
316273.XCV2899(PF01431) (PF05649)(plastid)
316273.XCV4286+mitochondrial; (plastid)
316273.XCV1721(+)+mitochondrial; (plastid)
316273.XCV1720+ER
316273.XCV1727(>)(ER); ER
316273.XCV0833+ER
316273.XCV2080(PF06884)ER
316273.XCV1192+(ER)
316273.XCV0007(PF09295)ER
316273.XCV0228(+)(PF00665)(mitochondrial)
316273.XCV2719++(PF05593)
316273.XCV2715(PF05593)ER
316273.XCV2404+mitochondrial; (mitochondrial)
316273.XCV2572+(mitochondrial)
316273.XCV3290(+)(>)ER
316273.XCV4017(>)ER
316273.XCV4121(<)ER
316273.XCV2760(PF08212)ER
316273.XCV1296(+)(PF00665)(mitochondrial)
316273.XCV3962+(mitochondrial)
316273.XCV0936(PF08332)ER
316273.XCV4136(PF00930)ER
316273.XCV3132+ER
316273.XCV3640PF04733ER
316273.XCV0590(PF00328)ER; (ER)
316273.XCV4225(PF00328)ER
316273.XCV4226(PF01419)ER
316273.XCV2774(PF01963)(ER); plastid
316273.XCV3910+(mitochondrial); plastid
316273.XCV3655(<)ER
316273.XCV3018+(mitochondrial); (plastid)
316273.XCV4365(PF08212)ER
316273.XCV0474(PF07653)mitochondrial
316273.XCV1099(<)mitochondrial; (mitochondrial)
316273.XCV3338+(mitochondrial); (plastid)
316273.XCV0041+ER
316273.XCV0683(PF08212)ER
316273.XCV1311(PF07720)ER
316273.XCV4191+(mitochondrial)
316273.XCV1528+ER
316273.XCV1154(>)ER
316273.XCV3328(>)ER
316273.XCV3250(PF10142)ER
316273.XCV3470(PF08332)ER
316273.XCV1124+(ER)
316273.XCV1274+ER
316273.XCV2026(>)ER
316273.XCV2022+(>)plastid
316273.XCV1938+ER
316273.XCV3686(>)ER
316273.XCV1806+(mitochondrial); (plastid)
316273.XCV2874(>)mitochondrial; (mitochondrial)
316273.XCV1541+ER
316273.XCV4092(>)(mitochondrial); ER
316273.XCV3695+(mitochondrial); (plastid)
316273.XCV0233+ER
316273.XCV2596(>)ER
316273.XCV2075+mitochondrial; (mitochondrial)
316273.XCV3194+(mitochondrial)
316273.XCV2917+(mitochondrial); (plastid)
316273.XCV4085(<)ER
316273.XCV2643(>)ER
316273.XCV1353(PF05593)ER
316273.XCV3845+(mitochondrial)
316273.XCV0189+(mitochondrial)
316273.XCV0740+plastid
316273.XCV0168+plastid
316273.XCV1344+(ER)
316273.XCV0365(+)(mitochondrial)
316273.XCV2296(PF00665) PF13276
316273.XCV2295PF01527(mitochondrial)
316273.XCV3085(+)ER
316273.XCV0625PF13683 PF13276
316273.XCV3537+plastid
316273.XCV3715+plastid
316273.XCV0579(+)(mitochondrial)
316273.XCV1715(+)(mitochondrial); (ER)
316273.XCV0370(+)(mitochondrial); plastid
316273.XCV2280(+)+(plastid)
316273.XCV1969PF13683 PF13276
316273.XCV3410PF01527(mitochondrial)
316273.XCV2618PF13683 PF13276
316273.XCV2725(+)ER
316273.XCV2723PF13683 PF13276
316273.XCV1034+(mitochondrial)
316273.XCV2437+(mitochondrial)
316273.XCV1634+plastid
316273.XCV0810+(plastid)
316273.XCV4041(+)(mitochondrial)
316273.XCV3398(PF00665) PF13276
316273.XCV3397PF01527(mitochondrial)
316273.XCV1551PF13683 PF13276
316273.XCV1554+(mitochondrial)
316273.XCV2735+plastid
316273.XCV0941+(mitochondrial)
316273.XCV3387PF13683 PF13276
316273.XCV3384PF01527(mitochondrial)
316273.XCV0706PF01527(mitochondrial)
316273.XCV0705(PF00665) PF13276
316273.XCV0125PF13683 PF13276
316273.XCV0012+(ER)
316273.XCV1513+(plastid)
316273.XCV0973+(ER)
316273.XCV2158PF01527(mitochondrial)
316273.XCV2157(PF00665) PF13276
316273.XCV2755(+)ER
316273.XCV3115(+)ER
316273.XCV1843PF01527(mitochondrial)
316273.XCV1840PF13683 PF13276
316273.XCV1844(PF00665) PF13276
316273.XCV0222PF13683 PF13276
316273.XCV2405+(ER)
316273.XCV2166+(plastid)
316273.XCV2360(+)ER
316273.XCV3360PF13683 PF13276
316273.XCV0555+(plastid)
316273.XCV3633(+)mitochondrial
316273.XCV4233(PF14441)(mitochondrial)
316273.XCV4235PF13683 PF13276
316273.XCV1078+(plastid)
316273.XCV4221+(ER)
316273.XCV0852(PF11539)(mitochondrial)
316273.XCV0993+(mitochondrial)
316273.XCV0253+(>)
316273.XCV3358+(PF05593)
316273.XCV1863PF13683 PF13276
316273.XCV2771(PF01963)(mitochondrial)
316273.XCV2772PF13683 PF13276
316273.XCV0209++
316273.XCV3914(+)(mitochondrial)
316273.XCV3827(+)(mitochondrial)
316273.XCV3409(PF00665) PF13276
316273.XCV0956(+)ER
316273.XCV4108+(plastid)
316273.XCV4214+(plastid)
316273.XCV0050(+)(ER)
316273.XCV2690PF01527(mitochondrial)
316273.XCV1098PF13683 PF13276
316273.XCV2351PF13683 PF13276
316273.XCV4123+(plastid)
316273.XCV3460+(ER)
316273.XCV0049(PF08975)(mitochondrial)
316273.XCV2689(PF00665) PF13276
316273.XCV4294+(plastid)
316273.XCV2521(+)(mitochondrial); mitochondrial
316273.XCV1132(+)(ER); (plastid)
316273.XCV0224+(plastid)
316273.XCV2816PF13683 PF13276
316273.XCV4300+(mitochondrial)
316273.XCV0415(+)ER; (ER)
316273.XCV1231(+)ER
316273.XCV1236+(plastid)
316273.XCV1300PF13683 PF13276
316273.XCV2780+plastid
316273.XCV3383(PF00665) PF13276
316273.XCV2024+mitochondrial
316273.XCV2021+plastid
316273.XCV3316(>)(mitochondrial)
316273.XCV3768(<)+
316273.XCV2806PF13683 PF13276
316273.XCV0066PF13683 PF13276
316273.XCV0665+(plastid)
316273.XCV1118PF01527(mitochondrial)
316273.XCV1119(PF00665) PF13276
316273.XCV3618(+)mitochondrial; (mitochondrial)
316273.XCV2247+(plastid)
316273.XCV1156++
316273.XCV0883+plastid
316273.XCV1358+plastid
316273.XCV3457(>)(ER)
316273.XCV3453+plastid
316273.XCV4095+(mitochondrial)
316273.XCV0540+(plastid)
316273.XCV3694(+)(mitochondrial); (plastid)
316273.XCV3072(+)mitochondrial; (plastid)
316273.XCV1699(PF00665) PF13276
316273.XCV4297(+)(ER)
316273.XCV2276+plastid
316273.XCV4408+plastid
316273.XCV2478(PF00665) PF13276
316273.XCV2477PF01527(mitochondrial)
316273.XCV2867PF01527(mitochondrial)
316273.XCV2866(PF00665) PF13276
316273.XCV0642(PF00930)plastid
316273.XCV0641(+)(mitochondrial); (plastid)
316273.XCV0428+(plastid)
316273.XCV0420(+)mitochondrial
316273.XCV0355PF01527(mitochondrial)
316273.XCV0354(PF00665) PF13276
316273.XCV1354(PF05593) (PF16158)
316273.XCV2263PF01527(mitochondrial)
316273.XCV2262(PF00665) PF13276
316273.XCV1599+(plastid)
316273.XCV3189(+)plastid
316273.XCV3188+
316273.XCV3216+
316273.XCV2927+
316273.XCV0985+
316273.XCV2857(+)(plastid)
316273.XCV3720+
316273.XCV4188+
316273.XCV0181+
316273.XCV0743(+)plastid
316273.XCV0564+
316273.XCV1162(+)plastid
316273.XCV1166(PF16387)
316273.XCV3859(+)(plastid)
316273.XCV2297PF13683
316273.XCV2299+
316273.XCV2458+
316273.XCV3939+
316273.XCV0633+
316273.XCV2933+
316273.XCV0620PF01527
316273.XCV0624+
316273.XCV0626PF01527
316273.XCV2848+
316273.XCV3535+
316273.XCV1973+
316273.XCV1977+
316273.XCV0191+
316273.XCV2850(>)
316273.XCV2660(<)
316273.XCV1575+
316273.XCV0578+
316273.XCV1393+
316273.XCV0377(+)(ER)
316273.XCV2281+not used
316273.XCV4150+
316273.XCV3308+
316273.XCV2942+
316273.XCV2944+
316273.XCV0619PF01527
316273.XCV3703+
316273.XCV1968PF01527
316273.XCV3411PF01527
316273.XCV1364+
316273.XCV2617PF01527
316273.XCV1814+
316273.XCV4271+
316273.XCV1561+
316273.XCV2722PF01527
316273.XCV2721(PF05593)
316273.XCV0294+plastid
316273.XCV0388(PF01163)
316273.XCV2435+
316273.XCV2547(PF04768)
316273.XCV1240+
316273.XCV2130+
316273.XCV3786+
316273.XCV4042(PF01163)
316273.XCV1501+
316273.XCV4048(PF08212)
316273.XCV0608(PF01764)
316273.XCV3396+
316273.XCV3392(+)+
316273.XCV0777+
316273.XCV3177+
316273.XCV1825(+)+
316273.XCV4265+
316273.XCV1550PF01527
316273.XCV2737(PF00930)
316273.XCV2556+
316273.XCV0806+
316273.XCV4073+
316273.XCV0943+
316273.XCV2895(+)+
316273.XCV3386PF01527
316273.XCV4381+
316273.XCV0493+
316273.XCV0494+
316273.XCV3164+
316273.XCV0126PF01527
316273.XCV4257+
316273.XCV0013(+)(mitochondrial)
316273.XCV3794+
316273.XCV2709+
316273.XCV1722+
316273.XCV1055+
316273.XCV1054+
316273.XCV3947+
316273.XCV3946+
316273.XCV3949+
316273.XCV2569+
316273.XCV1447+
316273.XCV3559+
316273.XCV2159+
316273.XCV2394+
316273.XCV3283+
316273.XCV4062+not used
316273.XCV3575+
316273.XCV3577+
316273.XCV4399+
316273.XCV3113(+)plastid
316273.XCV2624+
316273.XCV3621+
316273.XCV4481+
316273.XCV1841PF01527
316273.XCV1846PF13683
316273.XCV1847PF01527
316273.XCV1845+
316273.XCV1532+
316273.XCV3022+
316273.XCV0229PF01527
316273.XCV2717(PF05593)
316273.XCV0223PF01527
316273.XCV1999+
316273.XCV1448+
316273.XCV3073+
316273.XCV3173(+)(plastid)
316273.XCV2578+
316273.XCV1063+
316273.XCV0157+
316273.XCV1351+
316273.XCV2275+
316273.XCV3602+
316273.XCV0519+
316273.XCV4014(+)(mitochondrial)
316273.XCV3562+
316273.XCV3560(PF01764)
316273.XCV1061(<)
316273.XCV1828(+)(ER)
316273.XCV3363PF13683
316273.XCV3362PF01527
316273.XCV3589+
316273.XCV3583+
316273.XCV0729(+)(plastid)
316273.XCV2987PF17067
316273.XCV3634+
316273.XCV1851PF01527
316273.XCV1850PF13683
316273.XCV4231+
316273.XCV4234PF01527
316273.XCV3039+
316273.XCV3035+
316273.XCV3034+
316273.XCV3030+
316273.XCV2409(+)(mitochondrial)
316273.XCV0214(PF00665)
316273.XCV1297PF01527
316273.XCV1298+
316273.XCV4341(PF10013)not used
316273.XCV1278PF02551
316273.XCV1676(+)(mitochondrial)
316273.XCV2503(PF01963)
316273.XCV1070+
316273.XCV1074+
316273.XCV0258+
316273.XCV1303+
316273.XCV0859(+)(mitochondrial)
316273.XCV1191(<)
316273.XCV3357+
316273.XCV3359PF01527
316273.XCV2197+
316273.XCV3138(PF01764)
316273.XCV0735+
316273.XCV1194+
316273.XCV3645+
316273.XCV3649(+)+
316273.XCV1867(+)(plastid)
316273.XCV1862PF01527
316273.XCV3001+
316273.XCV2779+
316273.XCV2773PF01527
316273.XCV0440+
316273.XCV0443(+)+
316273.XCV0350+
316273.XCV0127(>)
316273.XCV3405+
316273.XCV2343+(PF00665)
316273.XCV2347+
316273.XCV3402(PF12588)
316273.XCV0693(+)+
316273.XCV4035+
316273.XCV0170(+)(plastid)
316273.XCV3347+
316273.XCV2838(<)
316273.XCV4156+
316273.XCV1332+
316273.XCV3651+
316273.XCV1871+
316273.XCV1502+
316273.XCV0051+
316273.XCV1479(+)(plastid)
316273.XCV0478(+)(plastid)
316273.XCV0479+
316273.XCV0475+
316273.XCV1097PF01527
316273.XCV0303+
316273.XCV4284(+)(plastid)
316273.XCV2030+
316273.XCV4287(>)
316273.XCV1659(>)
316273.XCV0872(+)(plastid)
316273.XCV4117+
316273.XCV3754(>)
316273.XCV0042+
316273.XCV3796(<)
316273.XCV0265+
316273.XCV0266(+)(>)
316273.XCV2759+
316273.XCV4371+
316273.XCV1222(<)
316273.XCV2680+
316273.XCV2684+
316273.XCV1138PF01527
316273.XCV1139PF13683
316273.XCV1136+
316273.XCV3800+
316273.XCV2534+
316273.XCV2322(+)(PF00665)
316273.XCV0864(PF00328)
316273.XCV2036+
316273.XCV2034(>)
316273.XCV2035+
316273.XCV2031+
316273.XCV4363+
316273.XCV0034+
316273.XCV3403+
316273.XCV4168+
316273.XCV4167(PF05593)
316273.XCV2817PF01527
316273.XCV3495+
316273.XCV0784+
316273.XCV1911+
316273.XCV3070+
316273.XCV0674(+)plastid
316273.XCV0675+
316273.XCV0442+
316273.XCV1410+
316273.XCV1414+
316273.XCV0412(+)(ER); not used
316273.XCV0411+
316273.XCV3922+
316273.XCV1233(+)plastid
316273.XCV4348+
316273.XCV1301PF01527
316273.XCV0522+
316273.XCV2786+
316273.XCV2220+
316273.XCV2256(+)(plastid)
316273.XCV2338+
316273.XCV2334+
316273.XCV1270+
316273.XCV1243+
316273.XCV2028+
316273.XCV0552+
316273.XCV2805PF01527
316273.XCV3656+
316273.XCV1941+
316273.XCV0791(+)(plastid)
316273.XCV3442+
316273.XCV0065PF01527
316273.XCV1425+
316273.XCV1682+
316273.XCV1684+
316273.XCV4402+
316273.XCV3860(+)(plastid)
316273.XCV1113PF01527
316273.XCV1114PF13683
316273.XCV3867+
316273.XCV2241(+)(mitochondrial)
316273.XCV2240+not used
316273.XCV4430+
316273.XCV0880+
316273.XCV2011(+)plastid
316273.XCV2016(+)(mitochondrial)
316273.XCV3279+
316273.XCV2902+
316273.XCV4098(+)(mitochondrial)
316273.XCV1432(>)
316273.XCV0438PF01527
316273.XCV0437(PF02902)
316273.XCV1928+
316273.XCV2653+
316273.XCV1698PF01527
316273.XCV1692+
316273.XCV1216+
316273.XCV4161+
316273.XCV4058+
316273.XCV2002+
316273.XCV2079+
316273.XCV1110+
316273.XCV4153(+)(mitochondrial)
316273.XCV3864+
316273.XCV4218+
316273.XCV3429+
316273.XCV3510+
316273.XCV3737+
316273.XCV4339+
316273.XCV0357+
316273.XCV0358+
316273.XCV2647+
316273.XCV1350+
316273.XCV1356PF01527
316273.XCV1355PF13683
316273.XCV0514(<)
316273.XCV1598(+)(plastid)
316273.XCV1204+
316273.XCV2888+
316273.XCV3684+
316273.XCV2588+
316273.XCV2100+
316273.XCV3898+
316273.XCV0146+
316273.XCV0161(+)
316273.XCV2673(+)
316273.XCV4457(+)
316273.XCV1169(+)
316273.XCV1764(+)
316273.XCV0368(+)
316273.XCV0367(+)
316273.XCV0360(+)
316273.XCV3983(+)
316273.XCV3985(+)
316273.XCV1206(+)
316273.XCV1705(+)
316273.XCV3220(+)
316273.XCV0980(+)
316273.XCV3531(+)
316273.XCV2847(+)
316273.XCV3713(+)
316273.XCV3150(+)
316273.XCV3151(+)
316273.XCV3051(+)
316273.XCV1800(+)
316273.XCV0611(+)
316273.XCV1396(+)
316273.XCV0375(+)
316273.XCV1028(+)
316273.XCV0599(+)
316273.XCV2288(+)
316273.XCV1625(+)
316273.XCV1517(+)
316273.XCV3885(+)
316273.XCV2120(+)
316273.XCV2947(+)
316273.XCV3521(+)
316273.XCV2724(+)
316273.XCV0444(+)
316273.XCV3852(+)
316273.XCV2883(+)
316273.XCV2542(+)
316273.XCV1168(+)
316273.XCV3858(+)
316273.XCV2137(+)
316273.XCV2136(+)
316273.XCV2135(+)
316273.XCV4396(+)
316273.XCV0818(+)
316273.XCV0819(+)
316273.XCV1955(+)
316273.XCV1953(+)
316273.XCV4460(+)
316273.XCV4466(+)
316273.XCV1829(+)
316273.XCV0657(+)
316273.XCV2734(+)
316273.XCV2739(+)
316273.XCV1739(+)
316273.XCV0392(+)not used
316273.XCV1049(+)
316273.XCV2621(+)
316273.XCV3952(+)
316273.XCV1606(+)
316273.XCV1912(+)
316273.XCV2550(+)
316273.XCV2143(+)
316273.XCV2147(+)
316273.XCV2385(+)
316273.XCV3696(+)
316273.XCV4070(+)
316273.XCV4075(+)
316273.XCV4076(+)
316273.XCV4078(+)
316273.XCV0940(+)
316273.XCV3389(+)
316273.XCV2896(+)
316273.XCV1943(+)
316273.XCV0704(+)
316273.XCV3161(+)
316273.XCV1831(+)
316273.XCV0018(+)
316273.XCV1614(+)
316273.XCV2393(+)
316273.XCV2390(+)
316273.XCV2397(+)
316273.XCV1377(+)
316273.XCV0836(+)
316273.XCV0837(+)
316273.XCV4064(+)
316273.XCV4063(+)not used
316273.XCV0958(+)
316273.XCV3573(+)
316273.XCV3373(+)
316273.XCV3379(+)
316273.XCV3596(+)
316273.XCV4397(+)
316273.XCV2975(+)
316273.XCV4240(+)
316273.XCV2407(+)
316273.XCV1631(+)
316273.XCV2570(+)
316273.XCV2574(+)
316273.XCV2367(+)
316273.XCV2365(+)
316273.XCV1914(+)
316273.XCV3563(+)
316273.XCV3580(+)
316273.XCV4126(+)
316273.XCV2986(+)
316273.XCV0345(+)
316273.XCV1855(+)not used
316273.XCV4347(+)
316273.XCV4342(+)
316273.XCV1674(+)
316273.XCV3941(+)
316273.XCV1077(+)
316273.XCV2176(+)
316273.XCV2376(+)
316273.XCV0255(+)
316273.XCV1309(+)
316273.XCV4004(+)not used
316273.XCV0994(+)
316273.XCV3532(+)
316273.XCV3354(+)
316273.XCV4135(+)
316273.XCV1122(+)
316273.XCV0731(+)
316273.XCV2998(+)
316273.XCV1866(+)
316273.XCV3006(+)
316273.XCV1463(+)
316273.XCV1467(+)
316273.XCV0447(+)
316273.XCV3916(+)
316273.XCV1609(+)
316273.XCV1884(+)
316273.XCV4193(+)
316273.XCV2516(+)
316273.XCV4190+
316273.XCV2208(+)
316273.XCV2203(+)
316273.XCV2341(+)
316273.XCV1177(+)
316273.XCV0177(+)
316273.XCV4030(+)
316273.XCV2776(+)
316273.XCV4039(+)
316273.XCV1175(+)
316273.XCV0172(+)
316273.XCV0909(+)
316273.XCV2374(+)
316273.XCV3348(+)
316273.XCV4089(+)
316273.XCV3652(+)
316273.XCV4211(+)
316273.XCV1371(+)
316273.XCV0056(+)
316273.XCV0697(+)
316273.XCV0692(+)
316273.XCV1475(+)
316273.XCV0572(+)
316273.XCV0472(+)
316273.XCV2699(+)
316273.XCV1890(+)
316273.XCV1251(+)
316273.XCV1096(+)
316273.XCV2188(+)
316273.XCV2597(+)
316273.XCV2352(+)
316273.XCV3105(+)
316273.XCV4022(+)
316273.XCV0914(+)
316273.XCV3330(+)
316273.XCV2829(+)
316273.XCV3244(+)
316273.XCV0262(+)
316273.XCV0264(+)
316273.XCV4376(+)
316273.XCV2686(+)not used
316273.XCV1314(+)
316273.XCV3803(+)
316273.XCV3804(+)
316273.XCV0681(+)
316273.XCV0113(+)
316273.XCV0865(+)
316273.XCV4160(+)
316273.XCV0212(+)
316273.XCV0785(+)
316273.XCV1783(+)
316273.XCV2237(+)
316273.XCV1412(+)not used
316273.XCV0414(+)
316273.XCV3676(+)
316273.XCV0326(+)
316273.XCV1128(+)
316273.XCV0105(+)
316273.XCV0106(+)
316273.XCV0453(+)
316273.XCV0949(+)
316273.XCV2337(+)
316273.XCV3388(+)
316273.XCV2023(+)
316273.XCV3310(+)
316273.XCV2802(+)
316273.XCV0052(+)
316273.XCV0557(+)
316273.XCV0796(+)
316273.XCV0080(+)
316273.XCV1423(+)
316273.XCV1428(+)
316273.XCV1939(+)
316273.XCV0400(+)
316273.XCV0068(+)
316273.XCV0332(+)
316273.XCV0534(+)
316273.XCV3869(+)
316273.XCV2795(+)
316273.XCV2302(+)
316273.XCV2308(+)
316273.XCV2013(+)
316273.XCV2231(+)
316273.XCV1834(+)
316273.XCV4311(+)
316273.XCV1209(+)
316273.XCV3276(+)
316273.XCV4002(+)
316273.XCV0651(+)
316273.XCV0654(+)
316273.XCV0656(+)
316273.XCV4323(+)
316273.XCV1937(+)
316273.XCV1691(+)
316273.XCV2659(+)
316273.XCV1323(+)
316273.XCV4295(+)
316273.XCV4296(+)
316273.XCV2270(+)
316273.XCV2271(+)
316273.XCV2742(+)
316273.XCV0613(+)
316273.XCV3520(+)
316273.XCV4151(+)
316273.XCV2864(+)
316273.XCV2919(+)
316273.XCV3736(+)
316273.XCV2488(+)
316273.XCV2646(+)
316273.XCV2649(+)
316273.XCV4422(+)
316273.XCV3846(+)
316273.XCV3849(+)
316273.XCV2461(+)
316273.XCV3064(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.1 (11/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.2 (2/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.5 (20/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================