Metamenu

Effective results for Clavibacter michiganensis subsp. sepedonicus (eggnog40)

Summary

Number of putative secreted proteins: 106
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 106 proteins (98 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
31964.CMS_2610(PF13936) PF00665mitochondrial
31964.CMS_1099(PF13936) PF00665mitochondrial
31964.CMS_1861(PF13936) PF00665mitochondrial
31964.CMS_2918(PF13936) PF00665mitochondrial
31964.CMS_0984(PF13936) PF00665mitochondrial
31964.CMS_0055(PF13936) PF00665mitochondrial
31964.CMS_2378(PF13936) PF00665mitochondrial
31964.CMS_1358(PF13936) PF00665mitochondrial
31964.CMS_2888PF00665(mitochondrial)
31964.CMS_2885PF00665mitochondrial
31964.CMS_1515PF00665(mitochondrial)
31964.CMS_1765PF00665mitochondrial
31964.CMS_0908PF00665mitochondrial; (mitochondrial)
31964.CMS_0003PF00665(mitochondrial)
31964.CMS_2854PF00665(mitochondrial)
31964.CMS_2629PF00665(mitochondrial)
31964.CMS_2999PF00665mitochondrial
31964.CMS_0614PF00665(mitochondrial)
31964.CMS_2192PF00665(mitochondrial)
31964.CMS_2191PF00665mitochondrial
31964.CMS_0433PF00665(mitochondrial)
31964.CMS_1259PF00665(mitochondrial)
31964.CMS_3000PF00665(mitochondrial)
31964.CMS_0601PF00665(mitochondrial)
31964.CMS_2290PF00665(mitochondrial)
31964.CMS_1085PF00665(mitochondrial)
31964.CMS_0737PF00665(mitochondrial)
31964.CMS_1394PF00665(mitochondrial)
31964.CMS_0421PF00665(mitochondrial)
31964.CMS_0931PF00665(mitochondrial)
31964.CMS_0934PF00665(mitochondrial)
31964.CMS_2601PF00665(mitochondrial)
31964.CMS_1720PF00665(mitochondrial)
31964.CMS_2043PF00665(mitochondrial)
31964.CMS_1658PF00665(mitochondrial)
31964.CMS_3025PF00665(mitochondrial)
31964.CMS_2811PF00665(mitochondrial)
31964.CMS_2927PF00665(mitochondrial)
31964.CMS_2388PF00665(mitochondrial)
31964.CMS_1043PF00665(mitochondrial)
31964.CMS_3036PF00665(mitochondrial)
31964.CMS_0392PF00665(mitochondrial)
31964.CMS_2062PF00665(mitochondrial)
31964.CMS_2486(PF09683)ER
31964.CMS_1058PF00665(mitochondrial)
31964.CMS_2724PF00665(mitochondrial)
31964.CMS_1900PF00665(mitochondrial)
31964.CMS_2904PF00665mitochondrial
31964.CMS_0645PF00665(mitochondrial)
31964.CMS_0086PF00665(mitochondrial)
31964.CMS_0516PF00665(mitochondrial)
31964.CMS_2347PF00665(mitochondrial)
31964.CMS_2341PF00665(mitochondrial)
31964.CMS_1333PF00665(mitochondrial)
31964.CMS_0267PF00665(mitochondrial)
31964.CMS_1931PF00665(mitochondrial)
31964.CMS_2001PF00665(mitochondrial)
31964.CMS_2002PF00665(mitochondrial)
31964.CMS_2130PF00665(mitochondrial)
31964.CMS_0453PF00665(mitochondrial)
31964.CMS_0693PF00665(mitochondrial)
31964.CMS_2227PF00665(mitochondrial)
31964.CMS_2356PF00665(mitochondrial)
31964.CMS_1326PF00665(mitochondrial)
31964.CMS_1855PF00665mitochondrial; (mitochondrial)
31964.CMS_2588PF00665(mitochondrial)
31964.CMS_0985PF00665(mitochondrial)
31964.CMS_0211PF00665(mitochondrial)
31964.CMS_0219PF00665(mitochondrial)
31964.CMS_0324PF00665(mitochondrial)
31964.CMS_0323PF00665mitochondrial; (mitochondrial)
31964.CMS_0446PF00665(mitochondrial)
31964.CMS_1912PF00665(mitochondrial)
31964.CMS_1824PF00665mitochondrial; (mitochondrial)
31964.CMS_1480PF00665(mitochondrial)
31964.CMS_1488PF00665(mitochondrial)
31964.CMS_1550PF00665(mitochondrial)
31964.CMS_1638PF00665(mitochondrial)
31964.CMS_1019PF00665(mitochondrial)
31964.CMS_0543PF00665(mitochondrial)
31964.CMS_1947PF00665(mitochondrial)
31964.CMS_2160PF00665(mitochondrial)
31964.CMS_2167PF00665(mitochondrial)
31964.CMS_1159PF00665(mitochondrial)
31964.CMS_1791PF00665mitochondrial; (mitochondrial)
31964.CMS_2303PF00665(mitochondrial)
31964.CMS_2796PF00665(mitochondrial)
31964.CMS_0038PF00665(mitochondrial)
31964.CMS_1575PF00665(mitochondrial)
31964.CMS_0787PF00665(mitochondrial)
31964.CMS_0140PF00665(mitochondrial)
31964.CMS_0561PF00665(mitochondrial)
31964.CMS_2401PF00665(mitochondrial)
31964.CMS_2543PF00665(mitochondrial)
31964.CMS_0025PF00665(mitochondrial)
31964.CMS_0481PF00665(mitochondrial)
31964.CMS_0578PF00665(mitochondrial)
31964.CMS_2328PF00665(mitochondrial)
31964.CMS_2296(PF14311)
31964.CMS_2297(PF10544)
31964.CMS_2687(PF06414)
31964.CMS_2685(PF06414)
31964.CMS_2164(PF10013)
31964.CMS_3094(PF05495)
31964.CMS_2774(PF10544)
31964.CMS_2555PF08213not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================