Effective results for Nitrobacter winogradskyi Nb-255 (eggnog40)

Summary

Number of putative secreted proteins: 237
- Predicted by T4SEpre: 82
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 168 proteins (110 high, 58 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
323098.Nwi_0552+(mitochondrial)
323098.Nwi_2777+ER
323098.Nwi_2607+mitochondrial
323098.Nwi_3099PF13565 PF00665(mitochondrial)
323098.Nwi_2546+ER
323098.Nwi_2021+ER
323098.Nwi_2161+(mitochondrial); mitochondrial
323098.Nwi_0725+mitochondrial
323098.Nwi_0618+mitochondrial
323098.Nwi_2578+(mitochondrial)
323098.Nwi_2119PF01527mitochondrial
323098.Nwi_2597+ER
323098.Nwi_1720+(mitochondrial)
323098.Nwi_0527+(mitochondrial)
323098.Nwi_2630(PF11162)ER
323098.Nwi_0072+(mitochondrial)
323098.Nwi_2901(PF11162)ER
323098.Nwi_2011+ER
323098.Nwi_0653+mitochondrial
323098.Nwi_2332+mitochondrial; (mitochondrial)
323098.Nwi_2489+ER
323098.Nwi_2794+mitochondrial
323098.Nwi_1869(PF11162)ER
323098.Nwi_1865+(mitochondrial)
323098.Nwi_1584+mitochondrial
323098.Nwi_2786+(mitochondrial)
323098.Nwi_1674+ER
323098.Nwi_2077PF00665(mitochondrial)
323098.Nwi_0235+ER
323098.Nwi_2317(PF11162)mitochondrial
323098.Nwi_2682+ER
323098.Nwi_0751(PF04588)ER
323098.Nwi_1539+ER
323098.Nwi_0355+(mitochondrial); mitochondrial
323098.Nwi_1519+ER
323098.Nwi_2735+(mitochondrial)
323098.Nwi_0005(PF14295)mitochondrial
323098.Nwi_1573PF01527mitochondrial
323098.Nwi_2710+ER
323098.Nwi_2706+mitochondrial; (mitochondrial)
323098.Nwi_0968PF12142mitochondrial; (mitochondrial)
323098.Nwi_0954(PF13358)(mitochondrial)
323098.Nwi_0953+(ER)
323098.Nwi_2941PF13565 PF00665
323098.Nwi_1945PF13565 PF00665
323098.Nwi_1016(PF13358)(mitochondrial)
323098.Nwi_1018PF13565 PF00665
323098.Nwi_1492PF13565 PF00665
323098.Nwi_3086PF13565 PF00665
323098.Nwi_1717PF00665(plastid)
323098.Nwi_0660PF13565 PF00665
323098.Nwi_2082PF13565 PF00665
323098.Nwi_2918PF00665(plastid)
323098.Nwi_2917PF00665(plastid)
323098.Nwi_2358PF13565 PF00665
323098.Nwi_2135PF13565 PF00665
323098.Nwi_1932PF13565 PF00665
323098.Nwi_0865PF13565 PF00665
323098.Nwi_0640PF13565 PF00665
323098.Nwi_2407PF13565 PF00665
323098.Nwi_0872PF13565 PF00665
323098.Nwi_0870PF13565 PF00665
323098.Nwi_0254PF13565 PF00665
323098.Nwi_2665PF13565 PF00665
323098.Nwi_2921(PF13358)(mitochondrial)
323098.Nwi_2329PF13565 PF00665
323098.Nwi_2818PF00665(plastid)
323098.Nwi_2819PF13565 PF00665
323098.Nwi_2674PF13565 PF00665
323098.Nwi_0308PF00665(plastid)
323098.Nwi_1097PF00665(plastid)
323098.Nwi_2866PF13565 PF00665
323098.Nwi_2865PF13565 PF00665
323098.Nwi_2260(PF13358)(mitochondrial)
323098.Nwi_1790(PF04588)ER; not used
323098.Nwi_2047PF13565 PF00665
323098.Nwi_2879PF13565 PF00665
323098.Nwi_0328+(mitochondrial)
323098.Nwi_3106PF13565 PF00665
323098.Nwi_1986(PF00101)(mitochondrial)
323098.Nwi_0366PF00665(plastid)
323098.Nwi_2433PF13565 PF00665
323098.Nwi_2437(PF13358)(mitochondrial)
323098.Nwi_1291(PF13358)(mitochondrial)
323098.Nwi_1293PF00665(plastid)
323098.Nwi_1296PF00665(plastid)
323098.Nwi_1299PF13565 PF00665
323098.Nwi_3112PF13565 PF00665
323098.Nwi_2225PF00665(plastid)
323098.Nwi_1999(PF13358)(mitochondrial)
323098.Nwi_0976(PF13358)(mitochondrial)
323098.Nwi_0481PF00665(plastid)
323098.Nwi_2899PF00665(plastid)
323098.Nwi_1964PF13565 PF00665
323098.Nwi_2411(PF13358)(mitochondrial)
323098.Nwi_2099PF13565 PF00665
323098.Nwi_1541PF13565 PF00665
323098.Nwi_1143PF13565 PF00665
323098.Nwi_0147(PF12762)(plastid)
323098.Nwi_0869PF01527
323098.Nwi_2953+
323098.Nwi_2952(PF00011)
323098.Nwi_0820(PF13481)
323098.Nwi_1803+
323098.Nwi_1395PF13384
323098.Nwi_1396(PF13358)
323098.Nwi_1156(PF12762)
323098.Nwi_1157(PF13358)
323098.Nwi_1158PF13384
323098.Nwi_2940(PF00011)
323098.Nwi_2942PF01527
323098.Nwi_2948PF13384
323098.Nwi_2949(PF13358)
323098.Nwi_1944PF01527
323098.Nwi_0541(PF01697)
323098.Nwi_1017PF01527
323098.Nwi_0944+
323098.Nwi_1493(PF13481)
323098.Nwi_1491PF01527
323098.Nwi_0838PF00665
323098.Nwi_0833+
323098.Nwi_3087PF01527
323098.Nwi_2371PF13384
323098.Nwi_2370(PF13358)
323098.Nwi_1712+
323098.Nwi_2117(PF00011)
323098.Nwi_2118(PF00011)
323098.Nwi_0530+
323098.Nwi_1486(PF13481)
323098.Nwi_0197+
323098.Nwi_0269+
323098.Nwi_2100PF01527
323098.Nwi_2103PF13384
323098.Nwi_2104(PF13358)
323098.Nwi_2107PF13384
323098.Nwi_2108(PF13358)
323098.Nwi_2030PF13384
323098.Nwi_0851(PF13358)
323098.Nwi_0852PF13384
323098.Nwi_2081PF01527
323098.Nwi_2357PF01527
323098.Nwi_2820PF01527
323098.Nwi_2136PF01527
323098.Nwi_1931PF01527
323098.Nwi_0462+
323098.Nwi_1116(PF00011)
323098.Nwi_1115(PF00011)
323098.Nwi_0866PF01527
323098.Nwi_0887PF06597
323098.Nwi_0886PF06597
323098.Nwi_0885PF06597
323098.Nwi_0884PF06597
323098.Nwi_1206+
323098.Nwi_0087+
323098.Nwi_0081(PF12762)
323098.Nwi_2839PF00665
323098.Nwi_2120PF00665
323098.Nwi_2015(PF13481)
323098.Nwi_0871PF01527
323098.Nwi_0659PF01527
323098.Nwi_0654(PF13358)
323098.Nwi_0655PF13384
323098.Nwi_0890+
323098.Nwi_1278(PF12762)
323098.Nwi_2936(PF00011)
323098.Nwi_2939(PF00011)
323098.Nwi_2330PF01527
323098.Nwi_1726+
323098.Nwi_0483(PF13358)
323098.Nwi_2060(PF13358)
323098.Nwi_2666PF01527
323098.Nwi_2468+
323098.Nwi_0314+
323098.Nwi_1314PF13384
323098.Nwi_1315(PF13358)
323098.Nwi_2928(PF00101)
323098.Nwi_2259+
323098.Nwi_1077+
323098.Nwi_1673+
323098.Nwi_2673PF01527
323098.Nwi_1785+
323098.Nwi_1258+
323098.Nwi_0782PF00665
323098.Nwi_0783PF01527
323098.Nwi_0232(PF13358)
323098.Nwi_0233PF13384
323098.Nwi_1108+
323098.Nwi_2867PF01527
323098.Nwi_2864PF01527
323098.Nwi_2046PF01527
323098.Nwi_1084+
323098.Nwi_1086(PF01442)
323098.Nwi_0759+
323098.Nwi_2059PF13384
323098.Nwi_0211(PF00011)
323098.Nwi_1889+
323098.Nwi_2847(PF13358)
323098.Nwi_2849(PF13358)
323098.Nwi_2848PF13384
323098.Nwi_3008(PF13358)
323098.Nwi_3007PF13384
323098.Nwi_2428+
323098.Nwi_0776+
323098.Nwi_2029(PF13358)
323098.Nwi_3105PF01527
323098.Nwi_2850PF00665
323098.Nwi_2434PF01527
323098.Nwi_0342+
323098.Nwi_1298PF01527
323098.Nwi_2729+
323098.Nwi_3117+
323098.Nwi_3113PF01527
323098.Nwi_3118PF07460
323098.Nwi_1387+
323098.Nwi_2880PF01527
323098.Nwi_1629(PF13481)
323098.Nwi_1623+
323098.Nwi_2408PF01527
323098.Nwi_0251+
323098.Nwi_1572PF00665
323098.Nwi_1523+
323098.Nwi_0712+
323098.Nwi_0717(PF10162)
323098.Nwi_0718+
323098.Nwi_0482PF13384
323098.Nwi_0631+
323098.Nwi_1967PF13384
323098.Nwi_1965PF01527
323098.Nwi_1968(PF13358)
323098.Nwi_0363(PF13358)
323098.Nwi_0817PF13384
323098.Nwi_0364PF00292
323098.Nwi_0965+
323098.Nwi_0707(PF13358)
323098.Nwi_0708PF13384
323098.Nwi_1144PF01527
323098.Nwi_0639PF01527

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.9 (9/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================