Metamenu

Effective results for Bacillus methylotrophicus FZB42 (eggnog40)

Summary

Number of putative secreted proteins: 198
- Predicted by T4SEpre: 192
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 39 proteins (1 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
326423.RBAM_004880+(PF16916)(mitochondrial)
326423.RBAM_022000(PF14765) (PF08242) (PF16197) (PF08659)
326423.RBAM_022030(PF14765) (PF08242) (PF16197) (PF08659)
326423.RBAM_021970(PF08242) (PF16197)ER
326423.RBAM_017000(PF14765) (PF08242) (PF16197) (PF08659)
326423.RBAM_021980(PF14765) (PF16197) (PF08659)(mitochondrial)
326423.RBAM_014360+(PF14765) (PF16197) (PF08659)
326423.RBAM_017040(PF14040)ER
326423.RBAM_002540+ER
326423.RBAM_030310+ER
326423.RBAM_030220+(mitochondrial)
326423.RBAM_022010(PF14765) (PF16197) (PF08659)
326423.RBAM_009160+ER
326423.RBAM_020670(PF00190)mitochondrial
326423.RBAM_013710+ER
326423.RBAM_014380(PF14765) (PF16197) (PF08659)
326423.RBAM_022280+ER
326423.RBAM_028310+ER
326423.RBAM_021590+ER
326423.RBAM_016990(PF14765) (PF16197) (PF08659)
326423.RBAM_003340+(ER)
326423.RBAM_020470+ER
326423.RBAM_017010(PF14765) (PF16197) (PF08659)
326423.RBAM_009120+ER
326423.RBAM_016980(PF14765) (PF16197) (PF08659)
326423.RBAM_010340+ER
326423.RBAM_017020(PF14765) (PF08242) (PF16197)
326423.RBAM_022960+mitochondrial
326423.RBAM_036390+ER
326423.RBAM_032340+mitochondrial; (mitochondrial)
326423.RBAM_007540(PF03407)(ER); (mitochondrial)
326423.RBAM_035000+ER
326423.RBAM_016090+ER
326423.RBAM_009430+ER
326423.RBAM_021000+(mitochondrial)
326423.RBAM_014550+ER
326423.RBAM_027230+mitochondrial
326423.RBAM_022020(PF14765) (PF16197) (PF08659)
326423.RBAM_035030+ER
326423.RBAM_000830+ER
326423.RBAM_026750(PF16916)ER
326423.RBAM_000340+ER; (ER)
326423.RBAM_004500+ER
326423.RBAM_032670+(mitochondrial)
326423.RBAM_002290+ER
326423.RBAM_016230+ER
326423.RBAM_002660+ER
326423.RBAM_021990(PF14765) (PF16197) (PF08659)
326423.RBAM_018400+ER
326423.RBAM_027480+ER
326423.RBAM_018870+ER
326423.RBAM_035660+ER
326423.RBAM_037370+ER
326423.RBAM_019640+ER
326423.RBAM_010190+ER; (ER)
326423.RBAM_028110+ER
326423.RBAM_002860(PF16916)(ER)
326423.RBAM_032990+ER
326423.RBAM_019670+ER
326423.RBAM_014350(PF14765) (PF16197) (PF08659)
326423.RBAM_019100+ER; (ER)
326423.RBAM_018500+ER
326423.RBAM_003610(PF14040)ER
326423.RBAM_011060+ER
326423.RBAM_014340(PF14765) (PF16197) (PF08659)
326423.RBAM_007920+ER
326423.RBAM_009410+(ER); (mitochondrial)
326423.RBAM_007260+(mitochondrial)
326423.RBAM_023700+(mitochondrial)
326423.RBAM_014390(PF16197) (PF08659)
326423.RBAM_005600+(PF16916)
326423.RBAM_021950(PF01154) (PF08540)
326423.RBAM_006400+(mitochondrial)
326423.RBAM_016950(PF01154) (PF08540)
326423.RBAM_035550+(ER)
326423.RBAM_014370(PF16197) (PF08659)
326423.RBAM_036750+(mitochondrial)
326423.RBAM_029990+(mitochondrial)
326423.RBAM_014400(PF14765) (PF08659)
326423.RBAM_011600+
326423.RBAM_018180(PF16197)
326423.RBAM_034320+
326423.RBAM_019260+
326423.RBAM_025350+
326423.RBAM_026550+
326423.RBAM_033210+
326423.RBAM_009790+
326423.RBAM_036300+
326423.RBAM_014420+
326423.RBAM_002820+
326423.RBAM_030760+
326423.RBAM_011960+
326423.RBAM_013700+
326423.RBAM_031970+
326423.RBAM_013230+
326423.RBAM_007200+
326423.RBAM_027450+
326423.RBAM_028520+
326423.RBAM_019930+
326423.RBAM_025750+
326423.RBAM_037790+
326423.RBAM_033230+
326423.RBAM_011780+
326423.RBAM_011730+
326423.RBAM_036530+
326423.RBAM_007210+
326423.RBAM_005580+
326423.RBAM_033730+
326423.RBAM_004360+
326423.RBAM_025030+
326423.RBAM_026100+
326423.RBAM_010030+
326423.RBAM_033550+
326423.RBAM_031950+
326423.RBAM_006590(PF08271)
326423.RBAM_003690+
326423.RBAM_004890+
326423.RBAM_015090+
326423.RBAM_026190+
326423.RBAM_011990(PF00454)
326423.RBAM_022900+
326423.RBAM_008050+
326423.RBAM_006720(PF16916)
326423.RBAM_028220(PF00190)
326423.RBAM_024210+
326423.RBAM_011740+
326423.RBAM_020040+
326423.RBAM_025780+
326423.RBAM_022220+
326423.RBAM_008300+
326423.RBAM_026090+
326423.RBAM_035280+
326423.RBAM_023770+
326423.RBAM_026890+
326423.RBAM_028490+
326423.RBAM_009480+
326423.RBAM_028760+
326423.RBAM_031190+
326423.RBAM_016080+
326423.RBAM_035940+
326423.RBAM_035620+
326423.RBAM_013680+
326423.RBAM_037130+
326423.RBAM_022780+
326423.RBAM_009250+
326423.RBAM_015990+
326423.RBAM_025490+
326423.RBAM_021170+
326423.RBAM_000480+
326423.RBAM_013780+
326423.RBAM_036380+
326423.RBAM_024640PF03215
326423.RBAM_017770+
326423.RBAM_003090+
326423.RBAM_030390(PF00190)
326423.RBAM_020780+
326423.RBAM_015540+
326423.RBAM_000720+
326423.RBAM_000650+
326423.RBAM_001520+
326423.RBAM_023450+
326423.RBAM_007560(PF03407)
326423.RBAM_032870+
326423.RBAM_004920+
326423.RBAM_004210+
326423.RBAM_021370+
326423.RBAM_014830+
326423.RBAM_036760+
326423.RBAM_023460+
326423.RBAM_005460+
326423.RBAM_015960+
326423.RBAM_027390+
326423.RBAM_026510+
326423.RBAM_016920+
326423.RBAM_003020(PF05225)
326423.RBAM_009260+
326423.RBAM_016070+
326423.RBAM_000020+
326423.RBAM_027010+
326423.RBAM_031800+
326423.RBAM_007930+
326423.RBAM_016860+
326423.RBAM_031110+
326423.RBAM_037970+
326423.RBAM_021340+
326423.RBAM_015340+
326423.RBAM_000760+
326423.RBAM_027440(PF16197)
326423.RBAM_026950+
326423.RBAM_034240+
326423.RBAM_035200+
326423.RBAM_002330+
326423.RBAM_032500+
326423.RBAM_038090+
326423.RBAM_019870+
326423.RBAM_011540+
326423.RBAM_005230+
326423.RBAM_026720+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================