Effective results for Psychrobacter sp. PRwf-1 (eggnog40)

Summary

Number of putative secreted proteins: 57
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 57 proteins (1 high, 56 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
349106.PsycPRwf_0234(PF13276) (PF00665)mitochondrial
349106.PsycPRwf_1165(PF13276) (PF00665)(mitochondrial)
349106.PsycPRwf_1230(PF13276) (PF00665)(mitochondrial)
349106.PsycPRwf_1495(PF13276) (PF00665)(mitochondrial)
349106.PsycPRwf_1362(PF13276) (PF00665)(mitochondrial)
349106.PsycPRwf_1496(PF01527)(mitochondrial)
349106.PsycPRwf_1091(PF13276) (PF00665)(mitochondrial)
349106.PsycPRwf_2292(PF17048)mitochondrial; plastid
349106.PsycPRwf_1055(PF13276) (PF00665)(mitochondrial)
349106.PsycPRwf_1478(PF13276) (PF00665)(mitochondrial)
349106.PsycPRwf_1166(PF01527)(mitochondrial)
349106.PsycPRwf_1229(PF01527)(mitochondrial)
349106.PsycPRwf_1352(PF00665)(mitochondrial)
349106.PsycPRwf_1364(PF01527)
349106.PsycPRwf_0985PF03414
349106.PsycPRwf_0984(PF05704)
349106.PsycPRwf_1119(PF01527)
349106.PsycPRwf_1118(PF13276)
349106.PsycPRwf_1117(PF01527)
349106.PsycPRwf_1120(PF00665)
349106.PsycPRwf_0235(PF01527)
349106.PsycPRwf_1358(PF00665)
349106.PsycPRwf_1355(PF01527)
349106.PsycPRwf_1357(PF01527)
349106.PsycPRwf_1356(PF00665)
349106.PsycPRwf_0240(PF01527)
349106.PsycPRwf_0700(PF03400)
349106.PsycPRwf_1938(PF03400)
349106.PsycPRwf_0265(PF03400)
349106.PsycPRwf_1090(PF01527)
349106.PsycPRwf_1052(PF01527)
349106.PsycPRwf_1053(PF00665)
349106.PsycPRwf_1057(PF01527)
349106.PsycPRwf_1504(PF00665)
349106.PsycPRwf_1505(PF01527)
349106.PsycPRwf_1470(PF13276)
349106.PsycPRwf_1471(PF00665)
349106.PsycPRwf_1472(PF00665)
349106.PsycPRwf_1473(PF01527)
349106.PsycPRwf_1476(PF00665)
349106.PsycPRwf_1477(PF01527)
349106.PsycPRwf_0058(PF14328)
349106.PsycPRwf_0730(PF01527)
349106.PsycPRwf_0731(PF00665)
349106.PsycPRwf_1469(PF01527)
349106.PsycPRwf_1525(PF03400)
349106.PsycPRwf_1028(PF00665)
349106.PsycPRwf_1027(PF01527)
349106.PsycPRwf_1025(PF01527)
349106.PsycPRwf_1024(PF00665)
349106.PsycPRwf_1492(PF00665)
349106.PsycPRwf_1493(PF01527)
349106.PsycPRwf_1944(PF00665)
349106.PsycPRwf_1943(PF01527)
349106.PsycPRwf_1315(PF00665)
349106.PsycPRwf_1314(PF01527)
349106.PsycPRwf_1480(PF01527)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================