Effective results for Paenibacillus polymyxa E681 (eggnog40)

Summary

Number of putative secreted proteins: 64
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 64 proteins (4 high, 60 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
349520.PPE_04705				PF03423 (PF01373)	ER
349520.PPE_01658				(PF02055) (PF17189)	ER
349520.PPE_00923				(PF02055) (PF17189)	ER
349520.PPE_02355				PF03423	ER
349520.PPE_01480				(PF13276)	(mitochondrial); mitochondrial
349520.PPE_03253				PF01357	ER; (ER)
349520.PPE_03072				(PF02156)	ER
349520.PPE_00492				(PF00622)	ER
349520.PPE_04595				(PF06013)	(mitochondrial)
349520.PPE_04909				(PF03442)	ER
349520.PPE_01136				(PF02156)	mitochondrial
349520.PPE_02493				(PF03442)	ER
349520.PPE_04341				PF05216	ER
349520.PPE_02571				(PF01477)	ER
349520.PPE_00551				(PF16875) (PF16874)	(plastid)
349520.PPE_00557				(PF02156)	ER
349520.PPE_00621				(PF02055) (PF17189)
349520.PPE_04158				(PF08244)	(mitochondrial)
349520.PPE_02329				(PF16875) (PF16874)
349520.PPE_00697				(PF16875) (PF16874)
349520.PPE_00682				(PF08244)	(mitochondrial)
349520.PPE_00979				(PF08244)	(mitochondrial)
349520.PPE_02576				(PF13276)	(mitochondrial)
349520.PPE_03165				(PF13276)
349520.PPE_02581				(PF13276)
349520.PPE_02585				(PF13276)
349520.PPE_00980				(PF08244)
349520.PPE_03005				(PF02938)
349520.PPE_04361				(PF02156)
349520.PPE_03402				(PF06013)
349520.PPE_01487				(PF00707)
349520.PPE_01473				(PF08244)
349520.PPE_00596				(PF10435)
349520.PPE_01499				(PF06013)
349520.PPE_00283				(PF08244)
349520.PPE_01648				(PF15979)
349520.PPE_01649				(PF15979)
349520.PPE_03273				(PF04446)
349520.PPE_00934				(PF06013)
349520.PPE_02275				(PF05448)
349520.PPE_02472				(PF13276)
349520.PPE_04729				(PF02403)
349520.PPE_01528				(PF06013)
349520.PPE_03506				(PF13276)
349520.PPE_00880				(PF13276)
349520.PPE_03607				(PF02938)
349520.PPE_01994				(PF06013)
349520.PPE_01995				(PF06013)
349520.PPE_01512				(PF08357)
349520.PPE_02856				(PF03266)
349520.PPE_00213				(PF08271)
349520.PPE_01505				(PF01885)
349520.PPE_01504				(PF01885)
349520.PPE_01506				(PF06013)
349520.PPE_01509				(PF06013)
349520.PPE_00976				(PF13276)
349520.PPE_03496				(PF05448)
349520.PPE_01361				(PF00707)
349520.PPE_02959				(PF13276)
349520.PPE_03817				(PF08795)
349520.PPE_03816				(PF08795)
349520.PPE_02369				(PF02156)
349520.PPE_00092				(PF02403)
349520.PPE_04647				(PF05448)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================