Effective results for Orientia tsutsugamushi str. Boryong (eggnog40)

Summary

Number of putative secreted proteins: 135
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 71 proteins (45 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
357244.OTBS_1980+PF13857 PF13637 (PF12796)
357244.OTBS_0486PF13857 PF13637mitochondrial
357244.OTBS_0290(PF07719)ER
357244.OTBS_2086PF13637(mitochondrial)
357244.OTBS_0883+ER
357244.OTBS_0547PF03219(ER)
357244.OTBS_0835+ER
357244.OTBS_0397+(mitochondrial)
357244.OTBS_0269+(ER)
357244.OTBS_0065+ER
357244.OTBS_1335+ER
357244.OTBS_1267+ER
357244.OTBS_0933+(PF00023) (PF12796)
357244.OTBS_0939+ER
357244.OTBS_2025+ER
357244.OTBS_0018+ER
357244.OTBS_1636PF03219ER
357244.OTBS_1258+ER
357244.OTBS_1509+ER
357244.OTBS_0476PF13857 (PF12796)(mitochondrial)
357244.OTBS_1952+mitochondrial; (mitochondrial)
357244.OTBS_1729+ER
357244.OTBS_2077+ER
357244.OTBS_1172+(PF12796)(ER)
357244.OTBS_0614+PF13857 (PF12796)
357244.OTBS_1869+ER
357244.OTBS_0106(PF07719)(mitochondrial); (ER)
357244.OTBS_0530+ER
357244.OTBS_0700+(mitochondrial)
357244.OTBS_1753PF13857 (PF12796)(mitochondrial)
357244.OTBS_1755(PF00023) PF13637 (PF12796)
357244.OTBS_1673+ER
357244.OTBS_1521(PF12796)(mitochondrial)
357244.OTBS_0034+ER
357244.OTBS_1035PF03219(mitochondrial)
357244.OTBS_1133+(PF12796) (PF00023)
357244.OTBS_1492+ER
357244.OTBS_1896+ER
357244.OTBS_1992+ER
357244.OTBS_1205+ER
357244.OTBS_1438+ER
357244.OTBS_0312PF03219ER
357244.OTBS_1090+ER
357244.OTBS_1151+ER
357244.OTBS_0989+ER
357244.OTBS_0999+(PF02902)
357244.OTBS_1052PF13857 (PF12796)
357244.OTBS_0691PF13637 (PF00023)
357244.OTBS_0729+PF13328
357244.OTBS_0098PF13857 (PF12796)
357244.OTBS_2178PF13637 (PF12796)
357244.OTBS_0071(PF12796) (PF00023)
357244.OTBS_0758PF13637(mitochondrial)
357244.OTBS_0920+(plastid)
357244.OTBS_0585+(ER)
357244.OTBS_2055+PF13328
357244.OTBS_0128+
357244.OTBS_0080+
357244.OTBS_0084(PF12796)
357244.OTBS_0902PF13637not used
357244.OTBS_0681+
357244.OTBS_0298PF13857not used
357244.OTBS_0295+
357244.OTBS_0871+
357244.OTBS_2085PF13328
357244.OTBS_1051+
357244.OTBS_1835+
357244.OTBS_0246(PF12796)
357244.OTBS_1679(PF12796)
357244.OTBS_1603+
357244.OTBS_1236(PF03959)
357244.OTBS_0632(PF07719)
357244.OTBS_0399+
357244.OTBS_0598+
357244.OTBS_0461(PF12796)
357244.OTBS_0089PF13328
357244.OTBS_2064(PF07719)
357244.OTBS_1081(PF07719)
357244.OTBS_1161(PF07719)
357244.OTBS_0849PF08373
357244.OTBS_1342PF08373
357244.OTBS_0161+
357244.OTBS_0112(PF07719)
357244.OTBS_0483PF13328
357244.OTBS_1744+
357244.OTBS_1745PF13328
357244.OTBS_0340+
357244.OTBS_2093(PF12796)
357244.OTBS_0800PF13328
357244.OTBS_0790+
357244.OTBS_0475PF13328
357244.OTBS_1074PF13328
357244.OTBS_1175PF13328
357244.OTBS_1174PF13857
357244.OTBS_1218+
357244.OTBS_0755PF13328
357244.OTBS_0613PF13328
357244.OTBS_0618+
357244.OTBS_0852+
357244.OTBS_0858+
357244.OTBS_1187(PF07719)
357244.OTBS_1452PF13328
357244.OTBS_1322+
357244.OTBS_1592PF13328
357244.OTBS_0787+
357244.OTBS_0816+
357244.OTBS_1241(PF12796)
357244.OTBS_1395+
357244.OTBS_0912(PF12796)
357244.OTBS_0919PF13328
357244.OTBS_0704+
357244.OTBS_0962PF13328
357244.OTBS_2009PF13328
357244.OTBS_2004+
357244.OTBS_0040PF13328
357244.OTBS_1237+
357244.OTBS_1614+
357244.OTBS_1936PF13328
357244.OTBS_0623PF13328
357244.OTBS_0820PF13328
357244.OTBS_1195(PF12796)
357244.OTBS_0135+
357244.OTBS_2014+
357244.OTBS_0959(PF12796)
357244.OTBS_1659PF13328
357244.OTBS_1433+
357244.OTBS_2052(PF14441)
357244.OTBS_2051(PF12796)
357244.OTBS_0313PF03219
357244.OTBS_0252+
357244.OTBS_1559+
357244.OTBS_1655+
357244.OTBS_1974PF13328
357244.OTBS_1802+
357244.OTBS_0189+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 2.3 (23/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================