Effective results for Campylobacter curvus 525.92 (eggnog40)

Summary

Number of putative secreted proteins: 13
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 13 proteins (2 high, 11 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
360105.CCV52592_0588(PF02460)ER
360105.CCV52592_0931(PF05992)ER
360105.CCV52592_0844(PF05935)ER
360105.CCV52592_0654(PF05992)(ER); ER
360105.CCV52592_0645(PF00209)ER
360105.CCV52592_1818(PF00209)ER
360105.CCV52592_1149(PF05935)ER; (ER)
360105.CCV52592_0959(PF00209)ER
360105.CCV52592_0960(PF00209)(ER)
360105.CCV52592_0958(PF00209)(ER)
360105.CCV52592_1856(PF02689)
360105.CCV52592_1220PF02516
360105.CCV52592_1213PF02516

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.125 (1/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================