Effective results for Streptococcus mitis B6 (eggnog40)

Summary

Number of putative secreted proteins: 137
- Predicted by T4SEpre: 99
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 62 proteins (47 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
365659.smi_0345(PF03644)mitochondrial
365659.smi_0861+ER
365659.smi_1622+mitochondrial
365659.smi_1297+ER
365659.smi_2024+ER
365659.smi_1398(PF06280)(ER)
365659.smi_0012+ER
365659.smi_1242+ER
365659.smi_1653(PF00344)ER; (ER)
365659.smi_1278+ER
365659.smi_0705(PF06280)ER
365659.smi_1885(PF00344)mitochondrial
365659.smi_0934+ER
365659.smi_0586+(mitochondrial); (plastid)
365659.smi_1987+ER
365659.smi_1848(PF03714)(mitochondrial)
365659.smi_1944+ER
365659.smi_0807+(mitochondrial); mitochondrial
365659.smi_0002+mitochondrial; (mitochondrial)
365659.smi_2040+ER
365659.smi_1143+ER
365659.smi_1141+(ER); (mitochondrial)
365659.smi_1362+ER
365659.smi_1331+ER
365659.smi_1371PF04103ER
365659.smi_1460+(mitochondrial)
365659.smi_1656+(PF01501)
365659.smi_1522+(mitochondrial)
365659.smi_0314+(mitochondrial)
365659.smi_0235PF13936
365659.smi_0231+
365659.smi_1907PF13936
365659.smi_1904+
365659.smi_0986PF13936
365659.smi_0987PF13936
365659.smi_1172+
365659.smi_1355+
365659.smi_0240PF13936
365659.smi_0407+
365659.smi_1918+
365659.smi_1101+
365659.smi_1100+
365659.smi_0747PF13936
365659.smi_0526+
365659.smi_0662PF13936
365659.smi_1364+
365659.smi_1111+
365659.smi_1114+
365659.smi_1731+
365659.smi_1609+
365659.smi_0399PF13936
365659.smi_0260PF13936
365659.smi_1419PF13936
365659.smi_0078+
365659.smi_0479+
365659.smi_0716+
365659.smi_1405PF13936
365659.smi_1408+
365659.smi_1409PF13936
365659.smi_1243+
365659.smi_0042PF13936
365659.smi_0701+
365659.smi_1655(PF01501)
365659.smi_1503+
365659.smi_0456+
365659.smi_0296+
365659.smi_1647+
365659.smi_1087PF13936
365659.smi_1466+
365659.smi_1468(PF13151)
365659.smi_0591+
365659.smi_0333+
365659.smi_1658(PF01501)
365659.smi_1880+
365659.smi_1886+
365659.smi_1863PF13936
365659.smi_0858PF13936
365659.smi_1674+
365659.smi_1073+
365659.smi_0583+
365659.smi_0585+
365659.smi_0618PF13936
365659.smi_0619PF13936
365659.smi_0032PF13936
365659.smi_1524PF13936
365659.smi_0107PF13936
365659.smi_1328+
365659.smi_1857PF13936
365659.smi_1856PF13936
365659.smi_0925PF13936
365659.smi_0929PF13936
365659.smi_1661(PF01501)
365659.smi_1068PF13936
365659.smi_1686+
365659.smi_0621+
365659.smi_1447+
365659.smi_0551+
365659.smi_0898+
365659.smi_2089+
365659.smi_1231(PF04991)
365659.smi_1230(PF04991)
365659.smi_1545+
365659.smi_1303PF13936
365659.smi_0014PF13936
365659.smi_0301PF13936
365659.smi_0789+
365659.smi_1830PF13936
365659.smi_0803+
365659.smi_0201PF13936
365659.smi_1829PF13936
365659.smi_1954PF13936
365659.smi_0976+
365659.smi_0818+
365659.smi_1761+
365659.smi_0140PF13936
365659.smi_0782PF13936
365659.smi_0780PF13936
365659.smi_0781PF13936
365659.smi_1964PF13936
365659.smi_1966+
365659.smi_0963PF13936
365659.smi_0967+
365659.smi_1797+
365659.smi_1798PF13936
365659.smi_1158PF13936
365659.smi_0686PF13936
365659.smi_0779PF13936
365659.smi_0512PF13936
365659.smi_0226+
365659.smi_0425PF01057
365659.smi_1011+
365659.smi_2068+
365659.smi_2061+
365659.smi_1160+
365659.smi_1167PF13936
365659.smi_1168(PF03714)
365659.smi_0767(PF04991)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================