Effective results for Labrenzia aggregata IAM 12614 (eggnog40)
Summary
Number of putative secreted proteins: 332
- Predicted by T4SEpre: 163
- Predicted by EffectiveELD: 33 eukaryotic-like domains, contained in 203 proteins (51 high, 152 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 384765.SIAM614_29936 | (PF06742) (PF06863) | ER | |||
| 384765.SIAM614_21852 | + | (PF03480) | ER; (ER) | ||
| 384765.SIAM614_01534 | (PF13276) PF13683 | mitochondrial | |||
| 384765.SIAM614_26156 | (PF06742) (PF06863) | ER | |||
| 384765.SIAM614_28826 | (PF06742) (PF06863) | ER | |||
| 384765.SIAM614_00255 | (PF13276) PF13683 | mitochondrial | |||
| 384765.SIAM614_00075 | (PF13276) PF13683 | mitochondrial | |||
| 384765.SIAM614_00572 | (PF13276) (PF00665) | mitochondrial | |||
| 384765.SIAM614_16517 | + | (PF00656) | ER | ||
| 384765.SIAM614_30786 | + | (PF03480) | ER | ||
| 384765.SIAM614_30661 | (PF03480) | ER | |||
| 384765.SIAM614_29171 | (PF06742) (PF06863) | (ER) | |||
| 384765.SIAM614_10093 | (PF03480) | ER | |||
| 384765.SIAM614_05628 | (PF03480) | ER | |||
| 384765.SIAM614_11778 | + | ER | |||
| 384765.SIAM614_10138 | (PF08239) | ER | |||
| 384765.SIAM614_10213 | + | mitochondrial | |||
| 384765.SIAM614_06733 | (PF00656) | ER | |||
| 384765.SIAM614_12688 | (PF00656) | ER | |||
| 384765.SIAM614_03518 | (PF03480) | ER; (ER) | |||
| 384765.SIAM614_15747 | + | ER | |||
| 384765.SIAM614_11983 | (PF03480) | (ER) | |||
| 384765.SIAM614_01004 | + | (mitochondrial) | |||
| 384765.SIAM614_18464 | + | ER | |||
| 384765.SIAM614_20970 | + | (ER) | |||
| 384765.SIAM614_23952 | + | ER | |||
| 384765.SIAM614_02171 | (PF04143) | ER | |||
| 384765.SIAM614_11868 | + | ER | |||
| 384765.SIAM614_27987 | (PF03480) | ER | |||
| 384765.SIAM614_22612 | + | mitochondrial; (mitochondrial) | |||
| 384765.SIAM614_29701 | (PF13276) | (mitochondrial) | |||
| 384765.SIAM614_01986 | + | ER | |||
| 384765.SIAM614_17154 | (PF03480) | mitochondrial; (mitochondrial) | |||
| 384765.SIAM614_01239 | (PF01527) | (mitochondrial) | |||
| 384765.SIAM614_15727 | + | ER | |||
| 384765.SIAM614_19381 | + | ER | |||
| 384765.SIAM614_08314 | PF13683 | (mitochondrial) | |||
| 384765.SIAM614_03261 | (PF00656) | ER | |||
| 384765.SIAM614_06578 | + | ER | |||
| 384765.SIAM614_13218 | + | ER | |||
| 384765.SIAM614_26381 | (PF03480) | mitochondrial | |||
| 384765.SIAM614_08299 | PF13683 | (mitochondrial) | |||
| 384765.SIAM614_20106 | + | ER | |||
| 384765.SIAM614_00872 | (PF08239) | (mitochondrial); (plastid) | |||
| 384765.SIAM614_07063 | + | ER | |||
| 384765.SIAM614_21752 | + | ER | |||
| 384765.SIAM614_06028 | + | (mitochondrial); plastid | |||
| 384765.SIAM614_01319 | (PF13495) | mitochondrial; (mitochondrial) | |||
| 384765.SIAM614_29211 | + | ER | |||
| 384765.SIAM614_29006 | (PF03480) | (mitochondrial) | |||
| 384765.SIAM614_21917 | (PF00656) | (ER) | |||
| 384765.SIAM614_21912 | (PF00656) | ER | |||
| 384765.SIAM614_22362 | + | ER | |||
| 384765.SIAM614_05085 | (PF01094) | ER | |||
| 384765.SIAM614_29806 | (PF03480) | ER | |||
| 384765.SIAM614_04115 | (PF04143) | ER | |||
| 384765.SIAM614_25027 | PF13683 | (ER); (mitochondrial) | |||
| 384765.SIAM614_30136 | (PF04143) | ER | |||
| 384765.SIAM614_14670 | + | ER; (mitochondrial) | |||
| 384765.SIAM614_00722 | + | (PF08239) | plastid | ||
| 384765.SIAM614_12853 | (PF00656) | ER | |||
| 384765.SIAM614_20066 | (PF00656) | ER; mitochondrial | |||
| 384765.SIAM614_20061 | + | ER | |||
| 384765.SIAM614_17744 | + | ER | |||
| 384765.SIAM614_05391 | (PF08239) | ER | |||
| 384765.SIAM614_20001 | (PF08239) | ER | |||
| 384765.SIAM614_25302 | (PF08239) | ER | |||
| 384765.SIAM614_22502 | (PF03480) | mitochondrial; (mitochondrial) | |||
| 384765.SIAM614_02821 | PF10712 | (mitochondrial) | |||
| 384765.SIAM614_00215 | (PF13276) (PF00665) | (ER) | |||
| 384765.SIAM614_19636 | + | ER | |||
| 384765.SIAM614_22192 | (PF03480) | ER; mitochondrial | |||
| 384765.SIAM614_28402 | (PF00656) | (ER); ER | |||
| 384765.SIAM614_01624 | (PF13495) | mitochondrial; (mitochondrial) | |||
| 384765.SIAM614_24892 | + | mitochondrial | |||
| 384765.SIAM614_29941 | (PF06742) (PF06863) | (ER) | |||
| 384765.SIAM614_11623 | + | ER | |||
| 384765.SIAM614_25342 | + | ER | |||
| 384765.SIAM614_19601 | + | ER | |||
| 384765.SIAM614_06643 | (PF03480) | ER | |||
| 384765.SIAM614_00010 | (PF13495) | mitochondrial; (mitochondrial) | |||
| 384765.SIAM614_06193 | + | ER | |||
| 384765.SIAM614_11643 | (PF04325) | (mitochondrial) | |||
| 384765.SIAM614_19134 | + | ER | |||
| 384765.SIAM614_01916 | + | ER | |||
| 384765.SIAM614_21532 | PF13683 | (mitochondrial) | |||
| 384765.SIAM614_26181 | (PF03480) | ER | |||
| 384765.SIAM614_27323 | (PF03480) | ER | |||
| 384765.SIAM614_00642 | (PF13495) | mitochondrial; (mitochondrial) | |||
| 384765.SIAM614_25417 | (PF04143) | ER | |||
| 384765.SIAM614_27657 | (PF01847) | (ER) | |||
| 384765.SIAM614_17859 | (PF03480) | ER | |||
| 384765.SIAM614_18924 | PF10563 | ER | |||
| 384765.SIAM614_21942 | (PF04143) | ER | |||
| 384765.SIAM614_20156 | (PF03480) | mitochondrial | |||
| 384765.SIAM614_26006 | (PF03480) | ER; (mitochondrial) | |||
| 384765.SIAM614_17544 | (PF00656) | ER | |||
| 384765.SIAM614_22837 | + | (ER) | |||
| 384765.SIAM614_21927 | (PF08239) | ER | |||
| 384765.SIAM614_12713 | + | ER | |||
| 384765.SIAM614_15215 | (PF06455) | ER | |||
| 384765.SIAM614_28077 | (PF03480) | ER; (ER) | |||
| 384765.SIAM614_22127 | (PF03480) | ER | |||
| 384765.SIAM614_25032 | + | ER | |||
| 384765.SIAM614_23462 | + | (mitochondrial) | |||
| 384765.SIAM614_29176 | (PF06742) (PF06863) | ||||
| 384765.SIAM614_06698 | (PF13023) | (mitochondrial) | |||
| 384765.SIAM614_00040 | (PF00665) | (mitochondrial) | |||
| 384765.SIAM614_21892 | + | (mitochondrial) | |||
| 384765.SIAM614_22557 | + | (mitochondrial) | |||
| 384765.SIAM614_28841 | (PF06742) (PF06863) | ||||
| 384765.SIAM614_00587 | (PF13276) (PF00665) | ||||
| 384765.SIAM614_22652 | (PF03480) | (mitochondrial) | |||
| 384765.SIAM614_14410 | (PF13551) (PF00665) | ||||
| 384765.SIAM614_01334 | (PF00665) | (mitochondrial) | |||
| 384765.SIAM614_01109 | (PF00665) | (mitochondrial) | |||
| 384765.SIAM614_16542 | + | (plastid) | |||
| 384765.SIAM614_08943 | (PF01527) | (mitochondrial) | |||
| 384765.SIAM614_01404 | (PF13551) (PF00665) | ||||
| 384765.SIAM614_21260 | + | (mitochondrial) | |||
| 384765.SIAM614_28836 | (PF06742) (PF06863) | not used | |||
| 384765.SIAM614_00702 | + | PF13683 | |||
| 384765.SIAM614_19706 | (PF03480) | plastid | |||
| 384765.SIAM614_00552 | + | (ER) | |||
| 384765.SIAM614_06663 | (PF05292) | (mitochondrial) | |||
| 384765.SIAM614_00577 | (PF01527) | (mitochondrial) | |||
| 384765.SIAM614_15100 | + | (plastid) | |||
| 384765.SIAM614_01249 | (PF00665) | (mitochondrial) | |||
| 384765.SIAM614_01244 | (PF13276) | (ER) | |||
| 384765.SIAM614_28831 | (PF06742) (PF06863) | ||||
| 384765.SIAM614_01094 | + | (plastid) | |||
| 384765.SIAM614_21517 | PF00312 | (mitochondrial) | |||
| 384765.SIAM614_14420 | (PF13551) (PF00665) | ||||
| 384765.SIAM614_08264 | (PF13276) PF13683 | ||||
| 384765.SIAM614_08194 | (PF01527) | (mitochondrial) | |||
| 384765.SIAM614_08204 | (PF13276) (PF00665) | ||||
| 384765.SIAM614_21902 | (PF00656) | (mitochondrial) | |||
| 384765.SIAM614_08953 | (PF13276) (PF00665) | ||||
| 384765.SIAM614_21652 | + | (mitochondrial) | |||
| 384765.SIAM614_00387 | + | ||||
| 384765.SIAM614_26948 | (PF08443) | ||||
| 384765.SIAM614_01474 | PF02371 | ||||
| 384765.SIAM614_05386 | + | ||||
| 384765.SIAM614_00250 | (PF01527) | ||||
| 384765.SIAM614_06648 | (PF03480) | ||||
| 384765.SIAM614_12378 | + | ||||
| 384765.SIAM614_28966 | (PF14707) | ||||
| 384765.SIAM614_00507 | + | ||||
| 384765.SIAM614_00502 | PF13683 | ||||
| 384765.SIAM614_18799 | PF02371 | ||||
| 384765.SIAM614_02836 | + | ||||
| 384765.SIAM614_14930 | + | ||||
| 384765.SIAM614_00265 | + | ||||
| 384765.SIAM614_01926 | + | ||||
| 384765.SIAM614_06693 | (PF00102) | ||||
| 384765.SIAM614_27278 | + | ||||
| 384765.SIAM614_19099 | (PF13023) | ||||
| 384765.SIAM614_30891 | + | ||||
| 384765.SIAM614_18719 | + | ||||
| 384765.SIAM614_21305 | + | ||||
| 384765.SIAM614_00542 | (PF00665) | ||||
| 384765.SIAM614_00225 | (PF01527) | ||||
| 384765.SIAM614_22237 | + | ||||
| 384765.SIAM614_23017 | + | ||||
| 384765.SIAM614_28981 | + | ||||
| 384765.SIAM614_06533 | + | ||||
| 384765.SIAM614_31546 | (PF13875) | ||||
| 384765.SIAM614_21460 | (PF00665) | ||||
| 384765.SIAM614_18814 | (PF08443) | ||||
| 384765.SIAM614_15490 | (PF11074) | ||||
| 384765.SIAM614_29706 | (PF01527) | ||||
| 384765.SIAM614_07003 | + | ||||
| 384765.SIAM614_00582 | PF02371 | ||||
| 384765.SIAM614_11803 | (PF08239) | ||||
| 384765.SIAM614_02521 | (PF00665) | ||||
| 384765.SIAM614_29611 | (PF06742) | ||||
| 384765.SIAM614_24807 | + | ||||
| 384765.SIAM614_07393 | + | ||||
| 384765.SIAM614_23867 | (PF04325) | not used | |||
| 384765.SIAM614_11103 | + | ||||
| 384765.SIAM614_00422 | + | ||||
| 384765.SIAM614_21527 | (PF01527) | ||||
| 384765.SIAM614_18974 | PF02371 | ||||
| 384765.SIAM614_18759 | (PF03480) | ||||
| 384765.SIAM614_12018 | + | ||||
| 384765.SIAM614_03653 | (PF03480) | not used | |||
| 384765.SIAM614_11788 | (PF14707) | ||||
| 384765.SIAM614_16922 | (PF06742) | ||||
| 384765.SIAM614_30191 | (PF00665) | ||||
| 384765.SIAM614_25082 | PF02371 | ||||
| 384765.SIAM614_31071 | (PF03480) | ||||
| 384765.SIAM614_12783 | + | ||||
| 384765.SIAM614_03638 | + | ||||
| 384765.SIAM614_30051 | + | ||||
| 384765.SIAM614_09463 | + | ||||
| 384765.SIAM614_12998 | + | ||||
| 384765.SIAM614_15500 | (PF11523) | ||||
| 384765.SIAM614_00672 | PF13683 | ||||
| 384765.SIAM614_06843 | (PF14707) | ||||
| 384765.SIAM614_08259 | (PF01527) | ||||
| 384765.SIAM614_13908 | + | ||||
| 384765.SIAM614_07508 | + | ||||
| 384765.SIAM614_24472 | + | ||||
| 384765.SIAM614_02691 | + | ||||
| 384765.SIAM614_02966 | + | ||||
| 384765.SIAM614_00337 | PF02371 | ||||
| 384765.SIAM614_29696 | PF13683 | ||||
| 384765.SIAM614_01314 | + | ||||
| 384765.SIAM614_05461 | + | ||||
| 384765.SIAM614_15562 | (PF00665) | ||||
| 384765.SIAM614_19531 | + | ||||
| 384765.SIAM614_23862 | (PF04325) | ||||
| 384765.SIAM614_05783 | + | ||||
| 384765.SIAM614_06788 | + | ||||
| 384765.SIAM614_13433 | (PF07364) | ||||
| 384765.SIAM614_14805 | + | ||||
| 384765.SIAM614_21932 | (PF04143) | ||||
| 384765.SIAM614_19981 | (PF14295) | ||||
| 384765.SIAM614_06413 | + | ||||
| 384765.SIAM614_12263 | + | ||||
| 384765.SIAM614_11518 | + | ||||
| 384765.SIAM614_24332 | PF02371 | ||||
| 384765.SIAM614_19511 | + | ||||
| 384765.SIAM614_00767 | PF02371 | ||||
| 384765.SIAM614_21827 | PF02371 | ||||
| 384765.SIAM614_18254 | + | ||||
| 384765.SIAM614_24352 | + | ||||
| 384765.SIAM614_24602 | + | ||||
| 384765.SIAM614_21587 | PF02371 | ||||
| 384765.SIAM614_21582 | PF02371 | ||||
| 384765.SIAM614_00747 | PF02371 | ||||
| 384765.SIAM614_08948 | PF02371 | ||||
| 384765.SIAM614_31181 | PF03188 | ||||
| 384765.SIAM614_29026 | + | ||||
| 384765.SIAM614_04580 | (PF07958) | ||||
| 384765.SIAM614_25217 | + | ||||
| 384765.SIAM614_30131 | (PF04143) | ||||
| 384765.SIAM614_19004 | (PF05292) | ||||
| 384765.SIAM614_14860 | + | ||||
| 384765.SIAM614_10163 | (PF13023) | ||||
| 384765.SIAM614_28232 | + | ||||
| 384765.SIAM614_02866 | + | ||||
| 384765.SIAM614_30846 | (PF03480) | not used | |||
| 384765.SIAM614_02491 | PF02371 | ||||
| 384765.SIAM614_28911 | (PF07364) | ||||
| 384765.SIAM614_16477 | + | ||||
| 384765.SIAM614_31006 | + | ||||
| 384765.SIAM614_00899 | PF02371 | not used | |||
| 384765.SIAM614_07268 | (PF00665) | ||||
| 384765.SIAM614_26568 | + | ||||
| 384765.SIAM614_01054 | PF13683 | ||||
| 384765.SIAM614_08923 | PF13683 | ||||
| 384765.SIAM614_22717 | PF02371 | ||||
| 384765.SIAM614_02651 | + | ||||
| 384765.SIAM614_01529 | (PF01527) | ||||
| 384765.SIAM614_00517 | (PF01527) | ||||
| 384765.SIAM614_00070 | (PF01527) | ||||
| 384765.SIAM614_00210 | (PF01527) | ||||
| 384765.SIAM614_12698 | (PF00656) | ||||
| 384765.SIAM614_15420 | + | ||||
| 384765.SIAM614_15425 | + | ||||
| 384765.SIAM614_00687 | (PF00665) | ||||
| 384765.SIAM614_22032 | + | ||||
| 384765.SIAM614_00235 | PF13683 | ||||
| 384765.SIAM614_00230 | PF02371 | ||||
| 384765.SIAM614_02161 | + | ||||
| 384765.SIAM614_03568 | + | ||||
| 384765.SIAM614_20201 | (PF03480) | ||||
| 384765.SIAM614_24252 | + | ||||
| 384765.SIAM614_19431 | + | ||||
| 384765.SIAM614_16117 | + | ||||
| 384765.SIAM614_02141 | PF02371 | ||||
| 384765.SIAM614_14995 | + | ||||
| 384765.SIAM614_27423 | PF02371 | ||||
| 384765.SIAM614_28297 | (PF03480) | ||||
| 384765.SIAM614_00547 | (PF13276) | ||||
| 384765.SIAM614_01766 | + | ||||
| 384765.SIAM614_26878 | PF02371 | ||||
| 384765.SIAM614_05501 | PF02371 | ||||
| 384765.SIAM614_09168 | (PF04325) | ||||
| 384765.SIAM614_24562 | + | ||||
| 384765.SIAM614_13508 | + | ||||
| 384765.SIAM614_00592 | (PF01527) | ||||
| 384765.SIAM614_24172 | (PF03480) | ||||
| 384765.SIAM614_02511 | (PF01527) | ||||
| 384765.SIAM614_03648 | + | ||||
| 384765.SIAM614_03643 | + | ||||
| 384765.SIAM614_11118 | + | ||||
| 384765.SIAM614_10578 | + | ||||
| 384765.SIAM614_00412 | PF13683 | ||||
| 384765.SIAM614_14795 | + | ||||
| 384765.SIAM614_00622 | (PF00665) | ||||
| 384765.SIAM614_21512 | (PF01527) | ||||
| 384765.SIAM614_25876 | + | ||||
| 384765.SIAM614_13953 | + | ||||
| 384765.SIAM614_02396 | + | ||||
| 384765.SIAM614_24002 | + | ||||
| 384765.SIAM614_04570 | PF02371 | ||||
| 384765.SIAM614_16042 | + | ||||
| 384765.SIAM614_13023 | + | ||||
| 384765.SIAM614_09603 | (PF00665) | ||||
| 384765.SIAM614_16512 | (PF00656) | ||||
| 384765.SIAM614_00452 | (PF13551) | ||||
| 384765.SIAM614_11998 | + | ||||
| 384765.SIAM614_22462 | PF02371 | ||||
| 384765.SIAM614_22467 | PF02371 | ||||
| 384765.SIAM614_22687 | (PF08443) | ||||
| 384765.SIAM614_16727 | (PF08443) | ||||
| 384765.SIAM614_28543 | (PF03480) | ||||
| 384765.SIAM614_31131 | + | ||||
| 384765.SIAM614_02971 | PF00312 | ||||
| 384765.SIAM614_08199 | PF02371 | ||||
| 384765.SIAM614_18679 | (PF08239) | ||||
| 384765.SIAM614_22162 | + | ||||
| 384765.SIAM614_13428 | (PF07364) | not used | |||
| 384765.SIAM614_16557 | (PF08443) | ||||
| 384765.SIAM614_20525 | + | ||||
| 384765.SIAM614_06403 | PF02371 | ||||
| 384765.SIAM614_18654 | (PF03480) | ||||
| 384765.SIAM614_12863 | + | ||||
| 384765.SIAM614_27882 | + | ||||
| 384765.SIAM614_00160 | (PF01527) | ||||
| 384765.SIAM614_00165 | PF02371 | ||||
| 384765.SIAM614_00752 | PF02371 | ||||
| 384765.SIAM614_18639 | (PF01442) | ||||
| 384765.SIAM614_09578 | + | ||||
| 384765.SIAM614_02196 | PF02371 | ||||
| 384765.SIAM614_13463 | (PF07364) | ||||
| 384765.SIAM614_18024 | + | ||||
| 384765.SIAM614_28716 | + | ||||
| 384765.SIAM614_20715 | (PF13495) | ||||
| 384765.SIAM614_01064 | PF02371 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.6 (6/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.6 (6/10 KEGG proteins)
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