Effective results for Sulfurovum sp. NBC37-1 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 38 proteins (4 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
387093.SUN_0884(PF06500)ER
387093.SUN_0885(PF06500)ER
387093.SUN_0505(PF03190)ER
387093.SUN_0504(PF03190)ER
387093.SUN_0054(PF13899)ER
387093.SUN_1908(PF00431)ER
387093.SUN_0060(PF13899)ER
387093.SUN_0490(PF13899)ER
387093.SUN_0652(PF03190)ER
387093.SUN_0733PF11074(mitochondrial)
387093.SUN_0057(PF03625)ER
387093.SUN_0250(PF13899)ER
387093.SUN_1035(PF13899)ER
387093.SUN_0647(PF03625)ER
387093.SUN_0915(PF05970)(mitochondrial)
387093.SUN_0045(PF03625)ER
387093.SUN_1328(PF13899)ER
387093.SUN_1852(PF13899)ER
387093.SUN_0982(PF05970) (PF02689)
387093.SUN_0103(PF02516)(ER)
387093.SUN_1766(PF01875)(mitochondrial)
387093.SUN_1263(PF01142)
387093.SUN_0507(PF03625)
387093.SUN_0994(PF14792)
387093.SUN_2349(PF02943)
387093.SUN_2298PF11074
387093.SUN_1812PF02807
387093.SUN_2133PF05203
387093.SUN_0382(PF02943)
387093.SUN_1028(PF12513)
387093.SUN_0115(PF03190)
387093.SUN_1193(PF01142)
387093.SUN_0692(PF13899)
387093.SUN_0541(PF16114)
387093.SUN_0799(PF03625)
387093.SUN_0977(PF01875)
387093.SUN_2011(PF07787)
387093.SUN_1859(PF03190)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================