Metamenu

Effective results for Roseobacter litoralis Och 149 (eggnog40)

Summary

Number of putative secreted proteins: 67
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 67 proteins (3 high, 64 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391595.RLO149_c034400(PF16350) (PF01571) (PF08669)ER
391595.RLO149_c005880(PF01571) (PF08669)(mitochondrial)
391595.RLO149_c023240(PF16350) (PF01571) (PF08669)(mitochondrial)
391595.RLO149_c003560(PF16350) (PF01571) (PF08669)(ER)
391595.RLO149_c022350(PF01571) (PF08669)(mitochondrial)
391595.RLO149_c027920(PF16350) (PF01571) (PF08669)(ER)
391595.RLO149_c006760(PF05990)(mitochondrial)
391595.RLO149_c031380(PF02239)ER; (ER)
391595.RLO149_c002400(PF11977)ER
391595.RLO149_c019230(PF00625)(mitochondrial)
391595.RLO149_c039110(PF16350) (PF01571) (PF08669)
391595.RLO149_c032050(PF16952)(ER); (plastid)
391595.RLO149_c031350(PF02239)ER
391595.RLO149_c029290(PF01571) (PF08669)(mitochondrial)
391595.RLO149_c039090(PF16350) (PF01571) (PF08669)
391595.RLO149_c042780(PF13653)ER
391595.RLO149_c037650(PF02239)ER
391595.RLO149_c031300(PF02239)ER
391595.RLO149_c035420(PF05990)ER
391595.RLO149_c020230(PF07701)plastid
391595.RLO149_c044360(PF01527)(mitochondrial)
391595.RLO149_c029730(PF01571) (PF08669)
391595.RLO149_c035590(PF01571) (PF08669)
391595.RLO149_c005760(PF01571) (PF08669)
391595.RLO149_c017130(PF03437)(ER)
391595.RLO149_c006610(PF01571) (PF08669)
391595.RLO149_c010340(PF05990)(mitochondrial)
391595.RLO149_c030110(PF01571) (PF08669)
391595.RLO149_c031700(PF00625)plastid
391595.RLO149_c033130(PF01527)
391595.RLO149_c024790(PF09585)
391595.RLO149_c008010(PF02574)
391595.RLO149_c031470(PF13875)
391595.RLO149_c007130PF03188
391595.RLO149_c043510(PF01527)
391595.RLO149_c011270PF11781
391595.RLO149_c032460(PF01527)
391595.RLO149_c023040(PF01527)
391595.RLO149_c043470(PF01527)
391595.RLO149_c039910(PF02574)
391595.RLO149_c039100(PF02574)
391595.RLO149_c003650(PF08547)
391595.RLO149_c029640(PF05153)
391595.RLO149_c020600(PF02574)
391595.RLO149_c025940(PF01527)
391595.RLO149_c036130(PF01527)
391595.RLO149_c008900(PF01527)
391595.RLO149_c019870(PF11927)
391595.RLO149_c010890(PF01527)
391595.RLO149_c020930(PF03437)
391595.RLO149_c044070(PF01527)
391595.RLO149_c005910(PF11927)
391595.RLO149_c005590(PF08547)
391595.RLO149_c014890(PF01527)
391595.RLO149_c033480PF00615
391595.RLO149_c036450(PF01527)
391595.RLO149_c032190(PF10162)
391595.RLO149_c022580(PF02574)
391595.RLO149_c036550(PF01527)
391595.RLO149_c013870(PF01786)
391595.RLO149_c036720(PF01527)
391595.RLO149_c038040(PF01527)
391595.RLO149_c025840(PF08975)
391595.RLO149_c036370(PF01527)
391595.RLO149_c024780(PF09585)
391595.RLO149_c017760(PF01527)
391595.RLO149_c016780(PF00625)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================