Effective results for Oceanibulbus indolifex HEL-45 (eggnog40)

Summary

Number of putative secreted proteins: 33
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 33 proteins (2 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391624.OIHEL45_08155(PF11977)ER
391624.OIHEL45_05655(PF13704)mitochondrial
391624.OIHEL45_09313(PF03567)(mitochondrial); mitochondrial
391624.OIHEL45_10673(PF13704)mitochondrial
391624.OIHEL45_05660(PF13704)mitochondrial
391624.OIHEL45_00537(PF09994)mitochondrial
391624.OIHEL45_14345(PF13704)(mitochondrial)
391624.OIHEL45_07695(PF03567)(plastid)
391624.OIHEL45_17446(PF13872) (PF13871)
391624.OIHEL45_18136(PF13872) (PF13871)
391624.OIHEL45_05650(PF02485)(plastid)
391624.OIHEL45_16966(PF03567)(mitochondrial)
391624.OIHEL45_07125(PF11160)
391624.OIHEL45_11615(PF09585)
391624.OIHEL45_08925(PF09458)
391624.OIHEL45_07225(PF03567)
391624.OIHEL45_07220(PF02485)
391624.OIHEL45_14355(PF13704)
391624.OIHEL45_20776(PF11160)
391624.OIHEL45_06650(PF00070)
391624.OIHEL45_06435(PF03417)
391624.OIHEL45_14350PF02475
391624.OIHEL45_03435(PF03417)
391624.OIHEL45_14335(PF13704)
391624.OIHEL45_16044(PF03417)
391624.OIHEL45_20231(PF03567)
391624.OIHEL45_05850PF02475
391624.OIHEL45_17756(PF09994)
391624.OIHEL45_00712(PF13704)
391624.OIHEL45_11570(PF13704)
391624.OIHEL45_17746(PF11523)
391624.OIHEL45_11620(PF09585)
391624.OIHEL45_18161(PF09994)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================