Effective results for Gallionella capsiferriformans ES-2 (eggnog40)

Summary

Number of putative secreted proteins: 74
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 74 proteins (1 high, 73 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
395494.Galf_2528(PF13426)ER
395494.Galf_1548(PF13426)ER
395494.Galf_1308(PF12974)(ER)
395494.Galf_2334(PF13426)ER
395494.Galf_1847(PF13426)ER
395494.Galf_2239(PF13426)ER
395494.Galf_2164(PF13426)(mitochondrial)
395494.Galf_1664(PF06414)(mitochondrial)
395494.Galf_2007(PF12974)ER
395494.Galf_1879(PF13426)ER
395494.Galf_2370(PF13426)ER
395494.Galf_2117(PF13426)ER
395494.Galf_2286(PF13426)ER
395494.Galf_1717(PF12974)ER; (ER)
395494.Galf_2926(PF12974)ER
395494.Galf_2741(PF12974)ER
395494.Galf_1639(PF13426)ER
395494.Galf_1636(PF13426)(mitochondrial)
395494.Galf_2677PF10563ER
395494.Galf_0102(PF13426)ER
395494.Galf_0758(PF12974)ER
395494.Galf_2060(PF13426)mitochondrial
395494.Galf_2260(PF13426)ER
395494.Galf_1958(PF13426)(mitochondrial)
395494.Galf_1313(PF12974)ER
395494.Galf_1869(PF13426)(mitochondrial)
395494.Galf_1693(PF00543)(mitochondrial)
395494.Galf_2349(PF13426)(ER)
395494.Galf_0070(PF00543)(mitochondrial)
395494.Galf_0901(PF13207)(plastid)
395494.Galf_1082(PF13844)(mitochondrial)
395494.Galf_1948(PF00216)
395494.Galf_0716(PF00216)
395494.Galf_0374(PF08357)
395494.Galf_1153(PF13426)
395494.Galf_2335(PF13426)
395494.Galf_0798(PF05173)
395494.Galf_2152(PF05173)
395494.Galf_1147(PF00216)
395494.Galf_0639(PF13426)
395494.Galf_1660(PF05173)
395494.Galf_0881(PF00216)
395494.Galf_2568(PF13426)
395494.Galf_1472(PF00216)
395494.Galf_1479(PF06414)
395494.Galf_0989(PF00216)
395494.Galf_1116(PF00216)
395494.Galf_1101(PF13844)
395494.Galf_0859(PF00543)
395494.Galf_1630(PF13426)
395494.Galf_2350(PF13426)
395494.Galf_1629(PF13426)
395494.Galf_1624(PF00216)
395494.Galf_0120(PF13426)
395494.Galf_2731(PF13426)
395494.Galf_1501(PF00216)
395494.Galf_0929(PF00543)
395494.Galf_0759(PF13426)
395494.Galf_2062(PF13426)
395494.Galf_2665(PF13426)
395494.Galf_1970(PF13426)
395494.Galf_0116(PF13426)
395494.Galf_1376(PF13426)
395494.Galf_1377(PF13426)
395494.Galf_0762(PF13426)
395494.Galf_2184(PF00543)
395494.Galf_0838(PF00543)
395494.Galf_0833(PF13426)
395494.Galf_0836(PF13426)
395494.Galf_1363(PF00216)
395494.Galf_2262(PF13426)
395494.Galf_1080(PF13844)
395494.Galf_1081(PF13844)
395494.Galf_1083(PF13844)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================