Effective results for Methylocella silvestris BL2 (eggnog40)

Summary

Number of putative secreted proteins: 91
- Predicted by T4SEpre: 73
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 35 proteins (2 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
395965.Msil_1075+(PF05990)ER
395965.Msil_0460(PF14295) (PF03659)mitochondrial
395965.Msil_0468+ER
395965.Msil_3149(PF01011)ER
395965.Msil_0171+ER
395965.Msil_2884+ER
395965.Msil_3913+ER; (ER)
395965.Msil_2611(PF05050)(mitochondrial)
395965.Msil_3471+ER; mitochondrial
395965.Msil_0808+ER
395965.Msil_0110(PF00190)mitochondrial
395965.Msil_0605+ER
395965.Msil_1502(PF13506)ER
395965.Msil_0914+mitochondrial
395965.Msil_0919+ER
395965.Msil_0130(PF13506)ER
395965.Msil_2062(PF03209)ER
395965.Msil_1094PF03080ER
395965.Msil_3387(PF01011)(ER)
395965.Msil_2260(PF01011)(mitochondrial)
395965.Msil_3028+ER
395965.Msil_3733(PF01011)ER
395965.Msil_3035(PF13506)ER
395965.Msil_0411(PF14269)ER
395965.Msil_1588+(ER)
395965.Msil_2037(PF03209)ER; (mitochondrial)
395965.Msil_3560+ER; (ER)
395965.Msil_1041(PF05990)ER
395965.Msil_3185+ER
395965.Msil_0471(PF01011)(ER)
395965.Msil_0473+ER
395965.Msil_1587(PF01011)ER
395965.Msil_2903+mitochondrial; (mitochondrial)
395965.Msil_1758(PF10162)(mitochondrial)
395965.Msil_1750(PF14494)ER
395965.Msil_1927(PF14269)mitochondrial
395965.Msil_3163+ER
395965.Msil_0203(PF14494)ER
395965.Msil_1320+(ER)
395965.Msil_1742+(ER)
395965.Msil_1889+(mitochondrial)
395965.Msil_2841+(mitochondrial)
395965.Msil_0043+plastid
395965.Msil_2115(PF05050)(plastid)
395965.Msil_0265+
395965.Msil_1540+
395965.Msil_0165+
395965.Msil_1160(PF05050)
395965.Msil_3461+
395965.Msil_2433+
395965.Msil_0763+
395965.Msil_1569(PF05990)
395965.Msil_0619+
395965.Msil_2183(PF00190)
395965.Msil_3116+
395965.Msil_2609+
395965.Msil_1351PF08557
395965.Msil_3803+
395965.Msil_2459+
395965.Msil_2678(PF00190)
395965.Msil_3220+
395965.Msil_3009+
395965.Msil_0288+
395965.Msil_2548+
395965.Msil_0722(PF00190)
395965.Msil_0729+
395965.Msil_1389+
395965.Msil_1718+
395965.Msil_2733(PF05050)
395965.Msil_2732(PF05050)
395965.Msil_2734(PF05050)
395965.Msil_0376+
395965.Msil_3616+
395965.Msil_2810+
395965.Msil_1103(PF00102)
395965.Msil_0711(PF13506)
395965.Msil_2233+
395965.Msil_2345+
395965.Msil_2691+
395965.Msil_0317+
395965.Msil_1482+
395965.Msil_2912+
395965.Msil_2914+
395965.Msil_3160+
395965.Msil_3548(PF01442)
395965.Msil_1148+
395965.Msil_2377+
395965.Msil_3522+
395965.Msil_0444+
395965.Msil_2559+
395965.Msil_2799+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.3 (3/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================