Effective results for Thioalkalivibrio sp. K90mix (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 42 proteins (0 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
396595.TK90_2445(PF14397)mitochondrial
396595.TK90_2329(PF03625)ER
396595.TK90_0095(PF02635)ER
396595.TK90_2301(PF02635)ER
396595.TK90_0692(PF02635)ER
396595.TK90_2534(PF14397)(mitochondrial)
396595.TK90_0691(PF02635)ER
396595.TK90_1764(PF03625)ER
396595.TK90_1760(PF02635)ER
396595.TK90_1301(PF03625)mitochondrial
396595.TK90_0952(PF02635)ER
396595.TK90_0823(PF03190)(ER)
396595.TK90_2431(PF14397)mitochondrial
396595.TK90_0616(PF14397)(mitochondrial)
396595.TK90_1542(PF02371)
396595.TK90_0639(PF02635)
396595.TK90_0638(PF01597)
396595.TK90_1024(PF02732)
396595.TK90_0511(PF02635)
396595.TK90_0516(PF12038)
396595.TK90_1902(PF03190)
396595.TK90_0663(PF02635)
396595.TK90_2037(PF02371)
396595.TK90_2313(PF12899)
396595.TK90_1687(PF02371)
396595.TK90_1660(PF01786)
396595.TK90_0640(PF01597)
396595.TK90_0422(PF02371)
396595.TK90_1892(PF03625)
396595.TK90_2066(PF02371)
396595.TK90_2068(PF02371)
396595.TK90_0222(PF02371)
396595.TK90_0228(PF02371)
396595.TK90_1049(PF02371)
396595.TK90_1410(PF05706)
396595.TK90_1746(PF01597)
396595.TK90_1244(PF02635)
396595.TK90_0979(PF03190)
396595.TK90_0971(PF03625)
396595.TK90_0809(PF02371)
396595.TK90_1707(PF02371)
396595.TK90_1719(PF01597)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================