Metamenu

Effective results for Geobacter lovleyi SZ (eggnog40)

Summary

Number of putative secreted proteins: 132
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 31 eukaryotic-like domains, contained in 132 proteins (7 high, 125 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
398767.Glov_2195(PF02310) (PF04055)(ER)
398767.Glov_0923(PF13394) (PF04055)ER; (ER)
398767.Glov_2204(PF02310) (PF04055)mitochondrial; ER
398767.Glov_1944(PF16199) (PF04055)(ER)
398767.Glov_2180(PF01695)(mitochondrial)
398767.Glov_0907(PF01695)(mitochondrial)
398767.Glov_2536PF00014ER
398767.Glov_2533PF12862ER
398767.Glov_2847(PF01695)(mitochondrial)
398767.Glov_3488(PF01695)(mitochondrial)
398767.Glov_0728(PF08881)ER
398767.Glov_0722(PF05023)ER
398767.Glov_0925(PF09837)(mitochondrial)
398767.Glov_0112(PF00314)ER
398767.Glov_3547(PF02416)ER
398767.Glov_2865(PF01695)mitochondrial
398767.Glov_2256(PF01695)(mitochondrial)
398767.Glov_1284(PF02416)ER
398767.Glov_1057(PF12838)(ER)
398767.Glov_1293(PF01695)(mitochondrial)
398767.Glov_2659(PF00173)ER
398767.Glov_2236(PF13394) (PF04055)(mitochondrial)
398767.Glov_2749PF03269ER
398767.Glov_0885(PF01695)(mitochondrial)
398767.Glov_3359(PF02310) (PF04055)(ER)
398767.Glov_3340(PF00882)ER
398767.Glov_3167(PF02416)ER
398767.Glov_0201(PF00173)ER
398767.Glov_0992(PF01715)mitochondrial; (mitochondrial)
398767.Glov_2379(PF00648)ER
398767.Glov_2789(PF02416)ER
398767.Glov_0048(PF03162)ER
398767.Glov_2098PF12862ER
398767.Glov_1226(PF01871)ER
398767.Glov_1228(PF04055)(mitochondrial)
398767.Glov_1992(PF09837)mitochondrial; (mitochondrial)
398767.Glov_2424PF16845ER
398767.Glov_0012(PF11074)(mitochondrial)
398767.Glov_0017(PF01695)(mitochondrial)
398767.Glov_1435(PF01695)(mitochondrial)
398767.Glov_2185(PF02310) (PF04055)
398767.Glov_1985(PF13394) (PF04055)
398767.Glov_1737(PF01739)(ER)
398767.Glov_2992(PF02310) (PF04055)
398767.Glov_2541(PF13394) (PF04055)
398767.Glov_0931(PF13394) (PF04055)
398767.Glov_1700(PF02416)ER; not used
398767.Glov_0277(PF02661)(mitochondrial)
398767.Glov_1290(PF02416)ER; not used
398767.Glov_2238(PF13394) (PF04055)
398767.Glov_1846(PF13394) (PF04055)
398767.Glov_0529(PF01871)(ER)
398767.Glov_3610(PF13394) (PF04055)
398767.Glov_3168(PF16199) (PF04055)
398767.Glov_2205(PF02310) (PF04055)
398767.Glov_2203(PF02310) (PF04055)
398767.Glov_2975(PF01739)plastid
398767.Glov_3401(PF02310) (PF04055)
398767.Glov_3363(PF02310) (PF04055)
398767.Glov_3090(PF02310) (PF04055)
398767.Glov_0941(PF02416)ER; not used
398767.Glov_0038(PF16199) (PF04055)
398767.Glov_3122(PF04055)(plastid)
398767.Glov_3057(PF02310) (PF04055)
398767.Glov_2208(PF13394) (PF04055)
398767.Glov_0797(PF02310) (PF04055)
398767.Glov_1406(PF16565)
398767.Glov_3260(PF02310)
398767.Glov_0919(PF12838)
398767.Glov_2840(PF02661)
398767.Glov_2440(PF02915)
398767.Glov_1731(PF01739)
398767.Glov_0422(PF04055)
398767.Glov_2899(PF04055)
398767.Glov_2049PF10520
398767.Glov_2265(PF04055)
398767.Glov_1384(PF02310)
398767.Glov_2815(PF01739)
398767.Glov_2707(PF12838)
398767.Glov_0625(PF04055)
398767.Glov_0626(PF01739)
398767.Glov_2662(PF04055)
398767.Glov_2243(PF04055)
398767.Glov_3534(PF02661)
398767.Glov_0093(PF02661)
398767.Glov_0470(PF04055)
398767.Glov_0892(PF04055)
398767.Glov_2129(PF04055)
398767.Glov_3637(PF04055)
398767.Glov_3639(PF02527)
398767.Glov_2836(PF02661)
398767.Glov_0918(PF09837)
398767.Glov_1897(PF02915)
398767.Glov_2133(PF02310)
398767.Glov_3199(PF04055)
398767.Glov_2224(PF04055)
398767.Glov_0864(PF12838)
398767.Glov_3353(PF03016)
398767.Glov_1856(PF12838)
398767.Glov_2103(PF04055)
398767.Glov_3187(PF04055)
398767.Glov_2212(PF12838)
398767.Glov_0851(PF02661)
398767.Glov_2361(PF01715)
398767.Glov_0191(PF02661)
398767.Glov_0662(PF04055)
398767.Glov_1554(PF12838)
398767.Glov_2118(PF01739)
398767.Glov_2370(PF04055)
398767.Glov_2565(PF02661)
398767.Glov_3417(PF02527)
398767.Glov_0040(PF12838)
398767.Glov_1797(PF02915)
398767.Glov_1794(PF02915)
398767.Glov_1159(PF04055)
398767.Glov_2571(PF02661)
398767.Glov_0828(PF02915)
398767.Glov_2310(PF12838)
398767.Glov_2956(PF00882)
398767.Glov_3132(PF12838)
398767.Glov_1781(PF04055)
398767.Glov_0566(PF01739)
398767.Glov_2140(PF02661)
398767.Glov_2093PF04733
398767.Glov_3124(PF00025)
398767.Glov_0575(PF04055)
398767.Glov_0571(PF12838)
398767.Glov_0804(PF02915)
398767.Glov_3336(PF01739)
398767.Glov_0368(PF12838)
398767.Glov_1181(PF12838)
398767.Glov_1234(PF04055)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================