Effective results for Streptococcus equi subsp. zooepidemicus (eggnog40)

Summary

Number of putative secreted proteins: 96
- Predicted by T4SEpre: 90
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 36 proteins (11 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
40041.SZO_03720+PF01391mitochondrial
40041.SZO_14890+PF01391(ER); (mitochondrial)
40041.SZO_12550(PF13518)(mitochondrial)
40041.SZO_13310+ER
40041.SZO_00020+mitochondrial; (mitochondrial)
40041.SZO_04910PF01391ER; (ER)
40041.SZO_11860+ER
40041.SZO_03040+ER
40041.SZO_02950+ER
40041.SZO_09941(PF09683)ER
40041.SZO_13850PF01391ER; (ER)
40041.SZO_05380PF01391ER; (ER)
40041.SZO_04720+ER
40041.SZO_01820+ER
40041.SZO_15530+ER
40041.SZO_13900+(mitochondrial)
40041.SZO_05350+(mitochondrial)
40041.SZO_05370(PF13518)(mitochondrial)
40041.SZO_03530+ER
40041.SZO_19400+ER
40041.SZO_16490(PF13518)(mitochondrial)
40041.SZO_12830+ER
40041.SZO_09470+ER
40041.SZO_15100+ER
40041.SZO_07010+(mitochondrial); (ER)
40041.SZO_01630+PF01391(mitochondrial)
40041.SZO_13290+(mitochondrial)
40041.SZO_11050+(PF13551)
40041.SZO_00830PF01391(mitochondrial)
40041.SZO_17320+(PF14021)
40041.SZO_02580+(PF13551)
40041.SZO_18110+PF01391
40041.SZO_11410(PF03714)(mitochondrial)
40041.SZO_02320+(PF13551)
40041.SZO_16920+(PF13551)
40041.SZO_12230+PF01391
40041.SZO_10150+(PF06280)
40041.SZO_00920+(PF13551)
40041.SZO_05150+(mitochondrial)
40041.SZO_11000+(mitochondrial)
40041.SZO_08570(PF13518)
40041.SZO_03100+
40041.SZO_16370+
40041.SZO_09430+
40041.SZO_15410+
40041.SZO_11070+
40041.SZO_19120+
40041.SZO_17550+
40041.SZO_12790+
40041.SZO_10330(PF01764)
40041.SZO_14810(PF06280)
40041.SZO_01150+
40041.SZO_17540PF01391
40041.SZO_10470+
40041.SZO_03140+
40041.SZO_00440+
40041.SZO_13910+
40041.SZO_03390(PF01764)
40041.SZO_00840PF01391
40041.SZO_03980+
40041.SZO_09800+
40041.SZO_10840+
40041.SZO_15640+
40041.SZO_00510+
40041.SZO_01930+
40041.SZO_10940+
40041.SZO_16270+
40041.SZO_09910+
40041.SZO_01300(PF13518)
40041.SZO_17640+
40041.SZO_10600+
40041.SZO_18460+
40041.SZO_14120+
40041.SZO_19370+
40041.SZO_14130+
40041.SZO_18700+
40041.SZO_05410+
40041.SZO_11750(PF03714)
40041.SZO_17280(PF14021)
40041.SZO_12990+
40041.SZO_09650(PF14311)
40041.SZO_01240(PF01764)
40041.SZO_08250+
40041.SZO_01530+
40041.SZO_00750+
40041.SZO_09640+
40041.SZO_03940+
40041.SZO_06510+
40041.SZO_13510+
40041.SZO_01640(PF05495)
40041.SZO_06330+
40041.SZO_14450(PF14021)
40041.SZO_06690(PF13518)
40041.SZO_07740(PF13518)
40041.SZO_10690+
40041.SZO_02210+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================