Effective results for Ralstonia pickettii 12J (eggnog40)

Summary

Number of putative secreted proteins: 737
- Predicted by EffectiveT3: 261 (high confidence), 332 (low confidence)
- Predicted by EffectiveCCBD: 24 within, 14 before, 33 behind expected region 25..70aa
- Predicted by T4SEpre: 77
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 31 proteins (0 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), Type IV, (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
402626.Rpic_2708		+			(ER)
402626.Rpic_3356	+	+		(PF01545) (PF16916)
402626.Rpic_1899			+		ER
402626.Rpic_2759			+		ER
402626.Rpic_2757			+		ER
402626.Rpic_3151	+				(ER)
402626.Rpic_3064		(>)			(mitochondrial)
402626.Rpic_3462			+		mitochondrial; ER
402626.Rpic_0264	+				(mitochondrial); (plastid)
402626.Rpic_4784		(>)			ER
402626.Rpic_4786	+				(mitochondrial)
402626.Rpic_4405			+		ER
402626.Rpic_3314		(>)			(mitochondrial)
402626.Rpic_3948	+				(ER)
402626.Rpic_2807	(+)	+			(mitochondrial)
402626.Rpic_1455		(>)			(ER)
402626.Rpic_0088			+		ER
402626.Rpic_0335	+				ER
402626.Rpic_1759			+		ER
402626.Rpic_3455		+			(ER)
402626.Rpic_0502			+		ER
402626.Rpic_0544			+		ER
402626.Rpic_1695			+		ER
402626.Rpic_1109	+				ER
402626.Rpic_4525	+				(ER)
402626.Rpic_4425		+			mitochondrial
402626.Rpic_3203			+		(mitochondrial)
402626.Rpic_3193		(>)			ER
402626.Rpic_0514			+		ER
402626.Rpic_3038			+		(mitochondrial)
402626.Rpic_3857				(PF15984)	ER
402626.Rpic_4352			+		ER
402626.Rpic_3213		+			ER
402626.Rpic_3794		(<)			ER
402626.Rpic_4842			+		ER
402626.Rpic_2448			+		ER; (ER)
402626.Rpic_2286	+				(mitochondrial)
402626.Rpic_3882	+				(ER)
402626.Rpic_0378			+		ER
402626.Rpic_4050			+		ER
402626.Rpic_3413	+				ER
402626.Rpic_3709			+		ER
402626.Rpic_3438	+				(mitochondrial)
402626.Rpic_0633		+			(ER)
402626.Rpic_3147			+		ER; (ER)
402626.Rpic_2096	+				(mitochondrial)
402626.Rpic_0014		(>)			(ER); ER
402626.Rpic_4243				(PF15984)	(ER)
402626.Rpic_4242				(PF15984)	ER
402626.Rpic_3597	+				(mitochondrial); (plastid)
402626.Rpic_0488		(>)			mitochondrial
402626.Rpic_1928		(<)			ER
402626.Rpic_1923			+		mitochondrial
402626.Rpic_0820		(>)			(ER)
402626.Rpic_1538		(<)			ER
402626.Rpic_3236			+		ER
402626.Rpic_2507				(PF03988)	ER; (ER)
402626.Rpic_0458			+		mitochondrial
402626.Rpic_3589		(>)			ER
402626.Rpic_0720		(>)			ER
402626.Rpic_1524		+			mitochondrial
402626.Rpic_0607			+		mitochondrial
402626.Rpic_4224		+			(ER)
402626.Rpic_3915				(PF05686)	mitochondrial
402626.Rpic_2207	+				ER
402626.Rpic_0933		+			(ER)
402626.Rpic_3601		+			ER; (ER)
402626.Rpic_1369	+				ER; (ER)
402626.Rpic_0520	+				(mitochondrial)
402626.Rpic_0859		(<)			ER
402626.Rpic_3335			+		(mitochondrial)
402626.Rpic_2046		(<)			(ER)
402626.Rpic_0031	+				(mitochondrial)
402626.Rpic_4685	(+)				(mitochondrial); plastid
402626.Rpic_4594	(+)				mitochondrial
402626.Rpic_4592				(PF03988)	(ER)
402626.Rpic_4750	+				(plastid)
402626.Rpic_2750	+		+
402626.Rpic_0681		(>)			(ER)
402626.Rpic_0272	+				(plastid)
402626.Rpic_4781	+				(ER)
402626.Rpic_4410				(PF14792)	(plastid)
402626.Rpic_2324	(+)				mitochondrial; (mitochondrial)
402626.Rpic_3811	(+)				(mitochondrial); (plastid)
402626.Rpic_2980		(>)			(mitochondrial)
402626.Rpic_1419	+				(plastid)
402626.Rpic_0727	(+)				mitochondrial; (mitochondrial)
402626.Rpic_2142	+				(plastid)
402626.Rpic_3040	+			(PF15984)
402626.Rpic_0856	(+)				(mitochondrial)
402626.Rpic_3699	(+)				mitochondrial
402626.Rpic_3513		(<)	+
402626.Rpic_3201	(+)				mitochondrial
402626.Rpic_1179	+				(mitochondrial)
402626.Rpic_1998	(+)				(mitochondrial)
402626.Rpic_4852		(>)			(plastid)
402626.Rpic_2451	(+)				(mitochondrial); (plastid)
402626.Rpic_2106	+			(PF13597)
402626.Rpic_1587				(PF01545) (PF16916)
402626.Rpic_1016	+				(plastid)
402626.Rpic_4849	+				(plastid)
402626.Rpic_0221	(+)	+
402626.Rpic_0577				(PF01545) (PF16916)
402626.Rpic_0190	+				plastid
402626.Rpic_2107	+			(PF13597)	not used
402626.Rpic_1371	+				(plastid)
402626.Rpic_4299	+				(ER)
402626.Rpic_1398			+	(PF02178)
402626.Rpic_4610	(+)				ER
402626.Rpic_2619	(+)				mitochondrial; (mitochondrial)
402626.Rpic_4476	+				plastid
402626.Rpic_3891	+				(plastid)
402626.Rpic_2941				(PF01545) (PF16916)
402626.Rpic_0610	+				(plastid)
402626.Rpic_0977	(+)				(mitochondrial)
402626.Rpic_2657		(>)			(mitochondrial)
402626.Rpic_1814	(+)				(ER); ER
402626.Rpic_4463	+				plastid
402626.Rpic_3397	+				(mitochondrial)
402626.Rpic_3553	(+)				(mitochondrial)
402626.Rpic_0555	+				ER; not used
402626.Rpic_0491		(>)			(plastid)
402626.Rpic_0499	+				(mitochondrial)
402626.Rpic_2713	(+)				(mitochondrial); (plastid)
402626.Rpic_0228	+				(plastid)
402626.Rpic_2572	(+)				(mitochondrial)
402626.Rpic_0953	(+)				(mitochondrial)
402626.Rpic_1199	(+)				ER
402626.Rpic_4257			+		(ER)
402626.Rpic_3962	(+)				mitochondrial
402626.Rpic_2166	+				(plastid)
402626.Rpic_3291	(+)				mitochondrial; (mitochondrial)
402626.Rpic_3039				(PF15984)	(mitochondrial)
402626.Rpic_3631	(+)				mitochondrial
402626.Rpic_1675				(PF01545) (PF16916)
402626.Rpic_1297	+				(plastid)
402626.Rpic_4732	+		+
402626.Rpic_0023	+	(>)
402626.Rpic_0025	+				(plastid)
402626.Rpic_1861	+				(plastid)
402626.Rpic_4033	+				(plastid)
402626.Rpic_0605	+				(ER)
402626.Rpic_4743	+		+
402626.Rpic_0813	+				plastid
402626.Rpic_2528	(+)				(ER)
402626.Rpic_2834		+
402626.Rpic_3010	+
402626.Rpic_3013	+
402626.Rpic_3015	+
402626.Rpic_3124		(>)
402626.Rpic_1878	+
402626.Rpic_0874	(+)				(mitochondrial)
402626.Rpic_1875	+
402626.Rpic_1252	+
402626.Rpic_1255	+
402626.Rpic_1257		(<)
402626.Rpic_4683	+
402626.Rpic_3933		(>)
402626.Rpic_2685	+
402626.Rpic_2350	+
402626.Rpic_3801	+
402626.Rpic_2152	+
402626.Rpic_2224		(>)
402626.Rpic_2826			+
402626.Rpic_2630	+
402626.Rpic_3468	+
402626.Rpic_0049	+
402626.Rpic_0864	+
402626.Rpic_1319	+
402626.Rpic_1403	+
402626.Rpic_0311	(+)				plastid
402626.Rpic_1226		+
402626.Rpic_1137	+
402626.Rpic_1138	+
402626.Rpic_0436	+
402626.Rpic_4767			+
402626.Rpic_4764	+
402626.Rpic_4320			+
402626.Rpic_4789	+
402626.Rpic_3400	+
402626.Rpic_4416		(>)
402626.Rpic_3816	+
402626.Rpic_2250	+
402626.Rpic_0301	+
402626.Rpic_0308	+
402626.Rpic_3784			+
402626.Rpic_3787	+
402626.Rpic_0070	+
402626.Rpic_0892	+
402626.Rpic_0896		(>)
402626.Rpic_0255	+
402626.Rpic_1788	(+)				(plastid)
402626.Rpic_0326	+
402626.Rpic_1237			+
402626.Rpic_1123	+
402626.Rpic_1124	+
402626.Rpic_4793	+
402626.Rpic_0591	(+)				(ER)
402626.Rpic_2333	(+)				(mitochondrial)
402626.Rpic_2799	+
402626.Rpic_2022	+
402626.Rpic_2804	+
402626.Rpic_3447	+
402626.Rpic_3046	+
402626.Rpic_3047	+
402626.Rpic_0063	+
402626.Rpic_0884	(+)	(>)
402626.Rpic_0244	+
402626.Rpic_0331	+
402626.Rpic_1754				(PF13551)
402626.Rpic_1685				(PF07714)
402626.Rpic_4092	+
402626.Rpic_4004		+
402626.Rpic_4895	+
402626.Rpic_4897	+
402626.Rpic_4328	+
402626.Rpic_2499	+
402626.Rpic_2301	+
402626.Rpic_2306			+
402626.Rpic_2348			+
402626.Rpic_3303	+
402626.Rpic_2276	+
402626.Rpic_2274	+
402626.Rpic_2279			+
402626.Rpic_0589			+
402626.Rpic_2874	+
402626.Rpic_3059	+
402626.Rpic_1694	+
402626.Rpic_0693	+
402626.Rpic_1102	+
402626.Rpic_4085	+
402626.Rpic_2052	+
402626.Rpic_2721	+
402626.Rpic_3449	+
402626.Rpic_2157			+
402626.Rpic_2344	+
402626.Rpic_4885	+
402626.Rpic_4888		(>)
402626.Rpic_2487	+
402626.Rpic_3683			+
402626.Rpic_3840	+
402626.Rpic_3847	+
402626.Rpic_3845	+
402626.Rpic_1046	(+)				(mitochondrial)
402626.Rpic_0067		(<)
402626.Rpic_3992	+
402626.Rpic_3993	+
402626.Rpic_2261	+
402626.Rpic_2260	+
402626.Rpic_1948	+
402626.Rpic_3205		+
402626.Rpic_1940	(+)				(ER)
402626.Rpic_3195		+
402626.Rpic_0649	+
402626.Rpic_3735	+
402626.Rpic_0519	+				not used
402626.Rpic_1597			+
402626.Rpic_0510	+
402626.Rpic_1916	+
402626.Rpic_0356	+
402626.Rpic_0350		+
402626.Rpic_1358	+
402626.Rpic_1172	+
402626.Rpic_1546	+
402626.Rpic_1423	+
402626.Rpic_4858	(+)				plastid
402626.Rpic_3338	+
402626.Rpic_3339	+
402626.Rpic_2293	+
402626.Rpic_3185			+
402626.Rpic_3416		(>)
402626.Rpic_1585				(PF01545)
402626.Rpic_0182	+
402626.Rpic_1905	(+)				(plastid)
402626.Rpic_3854	+
402626.Rpic_1761				(PF01545)
402626.Rpic_4535	+
402626.Rpic_4399	+				not used
402626.Rpic_2663		+
402626.Rpic_4442	+
402626.Rpic_2596	+
402626.Rpic_0463	(+)				(plastid)
402626.Rpic_2115			+
402626.Rpic_2939				(PF01545)
402626.Rpic_2931				(PF07714)
402626.Rpic_3408	+
402626.Rpic_0629	(+)				(ER)
402626.Rpic_1579	+
402626.Rpic_0570				(PF01545)
402626.Rpic_4203	+
402626.Rpic_1482	+
402626.Rpic_0372	+
402626.Rpic_0285	+
402626.Rpic_1391	+
402626.Rpic_1621	+
402626.Rpic_1154				(PF13551)
402626.Rpic_1159			+
402626.Rpic_4240	+
402626.Rpic_4711	+
402626.Rpic_1700	+
402626.Rpic_2615		(<)
402626.Rpic_4876	+
402626.Rpic_4875	+
402626.Rpic_4878	+
402626.Rpic_4879	+
402626.Rpic_4474	+
402626.Rpic_4324	(+)				(ER)
402626.Rpic_2724	+
402626.Rpic_2543	+
402626.Rpic_0552	(+)				(plastid)
402626.Rpic_3708	(+)		+
402626.Rpic_1563	+
402626.Rpic_1567		+
402626.Rpic_1565	+
402626.Rpic_1492	(+)				plastid
402626.Rpic_1491				(PF13551)
402626.Rpic_3431	+
402626.Rpic_4282	+
402626.Rpic_4518	+
402626.Rpic_1031			+
402626.Rpic_4511	+
402626.Rpic_4263	+
402626.Rpic_4260	+
402626.Rpic_4460	(+)				(plastid)
402626.Rpic_2738	+
402626.Rpic_2428	+
402626.Rpic_2420	(+)				plastid
402626.Rpic_0447			+
402626.Rpic_3557	+
402626.Rpic_0608	+
402626.Rpic_3559	(+)				(ER)
402626.Rpic_1551	+
402626.Rpic_0774		(<)
402626.Rpic_0392		(>)
402626.Rpic_3141	+
402626.Rpic_4076	+
402626.Rpic_4072	(+)				(plastid)
402626.Rpic_4071	+
402626.Rpic_4382			+
402626.Rpic_1043	+
402626.Rpic_4676	+
402626.Rpic_1804	+
402626.Rpic_4670		(<)
402626.Rpic_4810	+
402626.Rpic_4706	+
402626.Rpic_4496	(+)				(ER); not used
402626.Rpic_3149	(+)				(plastid)
402626.Rpic_2099			+
402626.Rpic_2384	+
402626.Rpic_3942		(<)
402626.Rpic_2894	+
402626.Rpic_2568	+
402626.Rpic_0991			+
402626.Rpic_3544	+
402626.Rpic_3763	+
402626.Rpic_0018		+
402626.Rpic_0015	+
402626.Rpic_0016	+
402626.Rpic_4201	+
402626.Rpic_0494	+
402626.Rpic_0835	+
402626.Rpic_0832	+
402626.Rpic_0230	+
402626.Rpic_1612		(>)
402626.Rpic_1724		+
402626.Rpic_4200	(+)				(plastid)
402626.Rpic_4395			+
402626.Rpic_1058			+
402626.Rpic_4667	+
402626.Rpic_3155	+
402626.Rpic_3755	+
402626.Rpic_2623	+
402626.Rpic_4939	+
402626.Rpic_3050	+
402626.Rpic_0710	+
402626.Rpic_2084	(+)				(plastid)
402626.Rpic_0444	+
402626.Rpic_2408	+
402626.Rpic_3970	+
402626.Rpic_2571	+
402626.Rpic_2570	+
402626.Rpic_2974	+
402626.Rpic_2887	+
402626.Rpic_3570	(+)		+
402626.Rpic_0007	+
402626.Rpic_1632	+
402626.Rpic_0823	+
402626.Rpic_1999	+
402626.Rpic_1849	+
402626.Rpic_4217	(+)				(plastid)
402626.Rpic_0223	+
402626.Rpic_1289	+
402626.Rpic_1920			+
402626.Rpic_1266	+
402626.Rpic_4293			+
402626.Rpic_1924			+
402626.Rpic_4658	(+)			(PF13597)	not used
402626.Rpic_4120	+
402626.Rpic_4657				(PF13597)
402626.Rpic_0531	+
402626.Rpic_2745	+
402626.Rpic_0451	+
402626.Rpic_4728	+
402626.Rpic_4724	+
402626.Rpic_2767	(+)				(plastid)
402626.Rpic_2762				(PF13551)
402626.Rpic_4010	+
402626.Rpic_4154	+
402626.Rpic_3960		(>)
402626.Rpic_3967	+
402626.Rpic_1212	(+)				(mitochondrial)
402626.Rpic_2505	(+)			(PF03988)
402626.Rpic_3101	+
402626.Rpic_2210			+
402626.Rpic_2211		(>)
402626.Rpic_3569	+
402626.Rpic_0925		(>)
402626.Rpic_3583	+
402626.Rpic_3171	+
402626.Rpic_3076	+
402626.Rpic_0701	+
402626.Rpic_0609	+
402626.Rpic_0588	+
402626.Rpic_1859			+
402626.Rpic_0212	+
402626.Rpic_0603	+
402626.Rpic_1677				(PF01545)
402626.Rpic_1290	+
402626.Rpic_2430	+
402626.Rpic_1079	+
402626.Rpic_2343	+
402626.Rpic_4503			+
402626.Rpic_2770	+
402626.Rpic_4915	+
402626.Rpic_3916	+
402626.Rpic_4128	+
402626.Rpic_3783		(<)
402626.Rpic_3829	(+)				(mitochondrial)
402626.Rpic_0972			+
402626.Rpic_2995	+
402626.Rpic_0936	+
402626.Rpic_2651	(+)		+
402626.Rpic_3649	+
402626.Rpic_0117	+
402626.Rpic_1464	(+)	+
402626.Rpic_0026	+
402626.Rpic_4039	+
402626.Rpic_1882	+
402626.Rpic_4106			+
402626.Rpic_4881	+
402626.Rpic_4580			+
402626.Rpic_4581	(+)				(plastid)
402626.Rpic_4587	+
402626.Rpic_2748	+
402626.Rpic_2843		(>)
402626.Rpic_4231	+
402626.Rpic_3908	+
402626.Rpic_3951	(+)		+
402626.Rpic_2694		+
402626.Rpic_2345	+
402626.Rpic_2341	+
402626.Rpic_4177		(>)
402626.Rpic_0103	(+)	(>)
402626.Rpic_4749	+
402626.Rpic_2525	+
402626.Rpic_3349	+
402626.Rpic_2832	(+)
402626.Rpic_2838	(+)
402626.Rpic_1609	(+)
402626.Rpic_0475	(+)
402626.Rpic_0056	(+)
402626.Rpic_4020	(+)
402626.Rpic_4011	(+)
402626.Rpic_4596	(+)
402626.Rpic_2752	(+)
402626.Rpic_0001	(+)
402626.Rpic_3930	(+)
402626.Rpic_3934	(+)
402626.Rpic_2536	(+)
402626.Rpic_3240	(+)
402626.Rpic_3467	(+)
402626.Rpic_3661	(+)
402626.Rpic_3668	(+)
402626.Rpic_0048	(+)
402626.Rpic_0267	(+)
402626.Rpic_1318	(+)
402626.Rpic_0315	(+)
402626.Rpic_1220	(+)
402626.Rpic_3634	(+)
402626.Rpic_0178	(+)
402626.Rpic_0371	(+)
402626.Rpic_4258	(+)
402626.Rpic_4787	(+)
402626.Rpic_3922	(+)
402626.Rpic_4418	(+)
402626.Rpic_2322	(+)
402626.Rpic_2254	(+)
402626.Rpic_0304	(+)
402626.Rpic_0415	(+)
402626.Rpic_0893	(+)
402626.Rpic_0528	(+)
402626.Rpic_1411	(+)
402626.Rpic_1452	(+)
402626.Rpic_1490	(+)
402626.Rpic_1456	(+)
402626.Rpic_4313	(+)
402626.Rpic_0574	(+)
402626.Rpic_4214	(+)
402626.Rpic_2023	(+)
402626.Rpic_3319	(+)
402626.Rpic_2800	(+)
402626.Rpic_0794	(+)
402626.Rpic_0082	(+)
402626.Rpic_0086	(+)
402626.Rpic_1339	(+)
402626.Rpic_1331	(+)
402626.Rpic_0332	(+)
402626.Rpic_1681	(+)
402626.Rpic_2492	(+)
402626.Rpic_2491	(+)
402626.Rpic_2497	(+)
402626.Rpic_2014	(+)
402626.Rpic_2998	(+)
402626.Rpic_2278	(+)
402626.Rpic_1572	(+)
402626.Rpic_0655	(+)
402626.Rpic_0653	(+)
402626.Rpic_3697	(+)
402626.Rpic_3695	(+)
402626.Rpic_0433	(+)
402626.Rpic_1439	(+)
402626.Rpic_1436	(+)
402626.Rpic_0349	(+)
402626.Rpic_1219	(+)
402626.Rpic_1326	(+)
402626.Rpic_1690	(+)
402626.Rpic_1104	(+)
402626.Rpic_4558	(+)
402626.Rpic_4339	(+)
402626.Rpic_4889	(+)
402626.Rpic_2486	(+)
402626.Rpic_3629	(+)
402626.Rpic_4427	(+)
402626.Rpic_4645	(+)
402626.Rpic_4529	(+)
402626.Rpic_3995	(+)
402626.Rpic_3734	(+)
402626.Rpic_1596	(+)
402626.Rpic_1598	(+)
402626.Rpic_0516	(+)
402626.Rpic_1918	(+)
402626.Rpic_0358	(+)
402626.Rpic_0353	(+)
402626.Rpic_1002	(+)
402626.Rpic_4631	(+)
402626.Rpic_4635	(+)
402626.Rpic_4856	(+)
402626.Rpic_2676	(+)
402626.Rpic_3856	(+)
402626.Rpic_2108	(+)
402626.Rpic_3983	(+)
402626.Rpic_1200	(+)
402626.Rpic_2926	(+)
402626.Rpic_0637	(+)
402626.Rpic_3722	(+)
402626.Rpic_3721	(+)
402626.Rpic_3724	(+)
402626.Rpic_1908	(+)
402626.Rpic_0360	(+)
402626.Rpic_0612	(+)
402626.Rpic_0219	(+)
402626.Rpic_4537	(+)
402626.Rpic_4534	(+)
402626.Rpic_0751	(+)
402626.Rpic_4623	(+)
402626.Rpic_0238	(+)
402626.Rpic_4843	(+)
402626.Rpic_4449	(+)
402626.Rpic_4447	(+)
402626.Rpic_3469	(+)
402626.Rpic_2599	(+)
402626.Rpic_2063	(+)
402626.Rpic_2069	(+)				not used
402626.Rpic_2441	(+)
402626.Rpic_2289	(+)
402626.Rpic_3884	(+)
402626.Rpic_2935	(+)
402626.Rpic_3402	(+)
402626.Rpic_1971	(+)
402626.Rpic_1972	(+)
402626.Rpic_3986	(+)
402626.Rpic_1715	(+)
402626.Rpic_1378	(+)
402626.Rpic_4059	(+)
402626.Rpic_4612	(+)
402626.Rpic_2610	(+)
402626.Rpic_4273	(+)
402626.Rpic_4475	(+)
402626.Rpic_2431	(+)
402626.Rpic_4167	(+)
402626.Rpic_0766	(+)
402626.Rpic_3521	(+)
402626.Rpic_0616	(+)
402626.Rpic_3702	(+)
402626.Rpic_3707	(+)
402626.Rpic_1494	(+)
402626.Rpic_1708	(+)
402626.Rpic_2656	(+)
402626.Rpic_1383	(+)
402626.Rpic_4281	(+)
402626.Rpic_0981	(+)
402626.Rpic_4609	(+)
402626.Rpic_3139	(+)
402626.Rpic_4461	(+)
402626.Rpic_0543	(+)
402626.Rpic_4785	(+)
402626.Rpic_2425	(+)
402626.Rpic_3955	(+)
402626.Rpic_3396	(+)
402626.Rpic_2550	(+)
402626.Rpic_1926	(+)
402626.Rpic_3178	(+)
402626.Rpic_3554	(+)
402626.Rpic_3776	(+)
402626.Rpic_0778	(+)
402626.Rpic_1951	(+)
402626.Rpic_3607	(+)
402626.Rpic_0152	(+)
402626.Rpic_1608	(+)
402626.Rpic_1737	(+)
402626.Rpic_4117	(+)
402626.Rpic_4674	(+)
402626.Rpic_4816	(+)
402626.Rpic_4709	(+)
402626.Rpic_4929	(+)
402626.Rpic_1862	(+)
402626.Rpic_2386	(+)
402626.Rpic_2385	(+)
402626.Rpic_2146	(+)
402626.Rpic_2895	(+)
402626.Rpic_2880	(+)
402626.Rpic_2189	(+)
402626.Rpic_3161	(+)
402626.Rpic_3547	(+)
402626.Rpic_3541	(+)
402626.Rpic_0946	(+)
402626.Rpic_0945	(+)
402626.Rpic_3549	(+)
402626.Rpic_1245	(+)
402626.Rpic_0495	(+)
402626.Rpic_0492	(+)
402626.Rpic_3617	(+)
402626.Rpic_4946	(+)
402626.Rpic_1548	(+)
402626.Rpic_1836	(+)
402626.Rpic_1614	(+)
402626.Rpic_2908	(+)
402626.Rpic_4393	(+)
402626.Rpic_3750	(+)
402626.Rpic_4661	(+)
402626.Rpic_4809	(+)
402626.Rpic_4803	(+)
402626.Rpic_4488	(+)
402626.Rpic_4483	(+)
402626.Rpic_4482	(+)
402626.Rpic_2711	(+)
402626.Rpic_4100	(+)
402626.Rpic_2085	(+)
402626.Rpic_2396	(+)
402626.Rpic_0982	(+)
402626.Rpic_4202	(+)
402626.Rpic_2575	(+)
402626.Rpic_2977	(+)
402626.Rpic_3115	(+)
402626.Rpic_4943	(+)
402626.Rpic_0950	(+)
402626.Rpic_3591	(+)
402626.Rpic_0003	(+)
402626.Rpic_2945	(+)
402626.Rpic_0487	(+)
402626.Rpic_0846	(+)
402626.Rpic_0139	(+)
402626.Rpic_1845	(+)
402626.Rpic_0226	(+)
402626.Rpic_1197	(+)
402626.Rpic_1921	(+)
402626.Rpic_1260	(+)
402626.Rpic_1261	(+)
402626.Rpic_1264	(+)
402626.Rpic_1268	(+)
402626.Rpic_4129	(+)
402626.Rpic_4127	(+)
402626.Rpic_1634	(+)
402626.Rpic_2983	(+)
402626.Rpic_3961	(+)
402626.Rpic_2164	(+)
402626.Rpic_0929	(+)
402626.Rpic_0036	(+)
402626.Rpic_3075	(+)
402626.Rpic_0726	(+)
402626.Rpic_3632	(+)
402626.Rpic_0455	(+)
402626.Rpic_4002	(+)
402626.Rpic_1671	(+)
402626.Rpic_0296	(+)
402626.Rpic_1070	(+)
402626.Rpic_1072	(+)
402626.Rpic_1078	(+)
402626.Rpic_1186	(+)
402626.Rpic_4139	(+)
402626.Rpic_4649	(+)
402626.Rpic_4502	(+)
402626.Rpic_4739	(+)
402626.Rpic_4037	(+)
402626.Rpic_4034	(+)
402626.Rpic_2236	(+)
402626.Rpic_2515	(+)
402626.Rpic_2510	(+)
402626.Rpic_2232	(+)
402626.Rpic_0079	(+)
402626.Rpic_3002	(+)
402626.Rpic_3001	(+)
402626.Rpic_0737	(+)
402626.Rpic_0113	(+)
402626.Rpic_1514	(+)
402626.Rpic_1881	(+)
402626.Rpic_1509	+
402626.Rpic_4234	(+)
402626.Rpic_0524	(+)
402626.Rpic_1248	(+)
402626.Rpic_4232	(+)
402626.Rpic_0556	(+)
402626.Rpic_2849	(+)
402626.Rpic_1192	(+)
402626.Rpic_4342	(+)
402626.Rpic_4162	(+)
402626.Rpic_0902	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.4 (4/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.9 (9/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 0.5 (4/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================