Effective results for Paracoccus sp. TRP (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 26 proteins (4 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
412597.PaTRP_010100000585(PF00777)mitochondrial; (mitochondrial)
412597.PaTRP_010100001629(PF02485)(mitochondrial)
412597.PaTRP_010100012869(PF01323)ER
412597.PaTRP_010100019122(PF01323)ER
412597.PaTRP_010100007884(PF04800)mitochondrial; (mitochondrial)
412597.PaTRP_010100018905(PF01323)ER
412597.PaTRP_010100019117(PF01323)(ER)
412597.PaTRP_010100015832(PF13872) (PF13871)
412597.PaTRP_010100017938(PF04800)(plastid)
412597.PaTRP_010100016297(PF13872) (PF13871)
412597.PaTRP_010100014138(PF01323)(ER)
412597.PaTRP_010100015492(PF01323)
412597.PaTRP_010100016971PF09458
412597.PaTRP_010100017096PF09458
412597.PaTRP_010100010309(PF01323)
412597.PaTRP_010100014826(PF04577)
412597.PaTRP_010100017933(PF01192)
412597.PaTRP_010100012644(PF13875)
412597.PaTRP_010100006049(PF01323)
412597.PaTRP_010100010299PF09458
412597.PaTRP_010100005224(PF01192)
412597.PaTRP_010100002349(PF04577)
412597.PaTRP_010100017801(PF01323)
412597.PaTRP_010100012839(PF02485)
412597.PaTRP_010100007824(PF04577)
412597.PaTRP_010100019824PF09458

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.25 (2/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================