Effective results for Eubacterium dolichum DSM 3991 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 42 proteins (3 high, 39 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
428127.EUBDOL_00177(PF13653)ER
428127.EUBDOL_01697(PF13320)(ER)
428127.EUBDOL_01966(PF11074)(mitochondrial)
428127.EUBDOL_01841(PF06777)(mitochondrial)
428127.EUBDOL_02259(PF11070)ER
428127.EUBDOL_02092(PF13276)
428127.EUBDOL_02071(PF13276)
428127.EUBDOL_02077(PF13276)
428127.EUBDOL_01670(PF13276)
428127.EUBDOL_01248(PF04098)
428127.EUBDOL_02051(PF13276)
428127.EUBDOL_01139(PF13276)
428127.EUBDOL_00997(PF13276)
428127.EUBDOL_01824(PF13276)
428127.EUBDOL_01353(PF02421)
428127.EUBDOL_00771(PF13276)
428127.EUBDOL_00343(PF00958)
428127.EUBDOL_01968(PF00882)
428127.EUBDOL_02006(PF02421)
428127.EUBDOL_00151(PF13320)
428127.EUBDOL_00096(PF01807)
428127.EUBDOL_01781(PF02421)
428127.EUBDOL_00408(PF01807)
428127.EUBDOL_02377PF12017
428127.EUBDOL_01913(PF02421)
428127.EUBDOL_01450(PF00834)
428127.EUBDOL_01438(PF12646)
428127.EUBDOL_00058(PF00958)
428127.EUBDOL_02170(PF13276)
428127.EUBDOL_01837PF14853
428127.EUBDOL_00335(PF03266)
428127.EUBDOL_01089(PF13276)
428127.EUBDOL_01550PF07453
428127.EUBDOL_00688(PF00834)
428127.EUBDOL_02163(PF13276)
428127.EUBDOL_00629(PF00834)
428127.EUBDOL_01636(PF13276)
428127.EUBDOL_01848(PF01991)
428127.EUBDOL_01996(PF13276)
428127.EUBDOL_01949(PF00882)
428127.EUBDOL_01046(PF01807)
428127.EUBDOL_00392(PF01807)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================