Effective results for Neorickettsia risticii str. Illinois (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 42
- Predicted by EffectiveELD: 2 eukaryotic-like domains, contained in 3 proteins (1 high, 2 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
434131.NRI_0379PF02326ER; (plastid)
434131.NRI_0100+ER
434131.NRI_0145+(ER)
434131.NRI_0194+(mitochondrial)
434131.NRI_0649+ER
434131.NRI_0402+ER
434131.NRI_0141+ER
434131.NRI_0701+ER
434131.NRI_0002+(mitochondrial)
434131.NRI_0891+(mitochondrial)
434131.NRI_0103+ER
434131.NRI_0641+ER
434131.NRI_0545+(mitochondrial)
434131.NRI_0626+(mitochondrial)
434131.NRI_0829+(ER)
434131.NRI_0653(PF00623)
434131.NRI_0654(PF00623)
434131.NRI_0068+
434131.NRI_0846+
434131.NRI_0442+
434131.NRI_0578+
434131.NRI_0915+
434131.NRI_0072+
434131.NRI_0828+
434131.NRI_0420+
434131.NRI_0580+
434131.NRI_0481+
434131.NRI_0412+
434131.NRI_0306+
434131.NRI_0017+
434131.NRI_0515+
434131.NRI_0516+
434131.NRI_0349+
434131.NRI_0463+
434131.NRI_0763+
434131.NRI_0119+
434131.NRI_0290+
434131.NRI_0793+
434131.NRI_0387+
434131.NRI_0870+
434131.NRI_0022+
434131.NRI_0293+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.3 (13/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================