Effective results for Marinitoga piezophila KA3 (eggnog40)

Summary

Number of putative secreted proteins: 45
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 45 proteins (8 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
443254.Marpi_0212				(PF13353)	(mitochondrial)
443254.Marpi_1830				(PF03266)	(mitochondrial)
443254.Marpi_1006				PF08309	ER
443254.Marpi_0744				(PF16561)	ER
443254.Marpi_1978				PF08309	ER
443254.Marpi_0295				(PF13455)	ER
443254.Marpi_2037				PF08309	ER
443254.Marpi_1336				PF08309	ER
443254.Marpi_1983				PF08309	ER
443254.Marpi_0633				PF08309	ER
443254.Marpi_0639				PF08309	ER
443254.Marpi_1340				(PF16561)	ER
443254.Marpi_1165				(PF09820) (PF08011)
443254.Marpi_1161				(PF09820) (PF08011)
443254.Marpi_0166				(PF09820) (PF08011)
443254.Marpi_0168				(PF09820) (PF08011)
443254.Marpi_2043				(PF09820) (PF08011)
443254.Marpi_0415				(PF09820) (PF08011)
443254.Marpi_1982				(PF09820) (PF08011)
443254.Marpi_1040				(PF09820) (PF08011)
443254.Marpi_2082				(PF01637)
443254.Marpi_1039				(PF01637)
443254.Marpi_0924				(PF08011)
443254.Marpi_0216				(PF01637)
443254.Marpi_1498				(PF13353)
443254.Marpi_1319				(PF13353)
443254.Marpi_1177				(PF13353)
443254.Marpi_0692				(PF13353)
443254.Marpi_1502				(PF13353)
443254.Marpi_1281				(PF01637)
443254.Marpi_0401				PF11443
443254.Marpi_0712				(PF12646)
443254.Marpi_0422				(PF09820)
443254.Marpi_1723				(PF13353)
443254.Marpi_1002				(PF13353)
443254.Marpi_0448				(PF09419)
443254.Marpi_1660				(PF13353)
443254.Marpi_0919				(PF13353)
443254.Marpi_0918				(PF13353)
443254.Marpi_0911				(PF13353)
443254.Marpi_0914				(PF08011)
443254.Marpi_1986				(PF09820)
443254.Marpi_1512				(PF13353)
443254.Marpi_1510				(PF13353)
443254.Marpi_1511				(PF13353)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================