Effective results for Arthrobacter chlorophenolicus A6 (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 31 proteins (1 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
452863.Achl_3821(PF00544)(ER); (mitochondrial)
452863.Achl_0340(PF12158)ER
452863.Achl_2956(PF02156)ER
452863.Achl_0508(PF06993)ER
452863.Achl_2764(PF06993)ER
452863.Achl_0980(PF02156)ER
452863.Achl_2908PF06645ER
452863.Achl_0440(PF02595)(mitochondrial)
452863.Achl_0495(PF00544)ER
452863.Achl_0496(PF00544)ER
452863.Achl_1020(PF06993)ER
452863.Achl_1032(PF12158)(ER)
452863.Achl_2075(PF12900)
452863.Achl_2085(PF12900)
452863.Achl_2084(PF12900)
452863.Achl_0239(PF02595)
452863.Achl_3638(PF12900)
452863.Achl_1178(PF00544)
452863.Achl_1885(PF12900)
452863.Achl_0154(PF02156)
452863.Achl_3379(PF12900)
452863.Achl_0438(PF02156)
452863.Achl_0982(PF12900)
452863.Achl_0194(PF02595)
452863.Achl_0196(PF04961)
452863.Achl_3439(PF02595)
452863.Achl_2910(PF14885)
452863.Achl_0014(PF00643)
452863.Achl_1735(PF12158)
452863.Achl_3464(PF04961)
452863.Achl_3110(PF09224)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================