Effective results for Streptomyces albus J1074 (eggnog40)

Summary

Number of putative secreted proteins: 53
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 53 proteins (3 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
457425.SSHG_05692(PF01094)(ER); ER
457425.SSHG_02731(PF01839)ER
457425.SSHG_01696(PF08530)ER
457425.SSHG_01986(PF13535)ER
457425.SSHG_00897(PF12862)mitochondrial; (mitochondrial)
457425.SSHG_05486(PF08530)(ER)
457425.SSHG_03731(PF09683)ER
457425.SSHG_01645(PF07555)ER
457425.SSHG_03315(PF14684)ER
457425.SSHG_03279(PF07224)(ER); (plastid)
457425.SSHG_03621(PF00648)(mitochondrial)
457425.SSHG_02833(PF10138)(mitochondrial); (plastid)
457425.SSHG_02815(PF01839)(mitochondrial)
457425.SSHG_02818(PF01839)(mitochondrial)
457425.SSHG_04506(PF07646)(mitochondrial)
457425.SSHG_03413(PF13535)(ER)
457425.SSHG_02046(PF01839)(mitochondrial)
457425.SSHG_03259(PF08530)(plastid)
457425.SSHG_05426(PF08530)(plastid)
457425.SSHG_00218(PF01756)
457425.SSHG_04892(PF06999)
457425.SSHG_02737(PF03301)
457425.SSHG_05058(PF08530)
457425.SSHG_05059(PF13535)
457425.SSHG_01828(PF10138)
457425.SSHG_05076PF04882
457425.SSHG_01779(PF13535)
457425.SSHG_01985(PF13535)
457425.SSHG_00179(PF08530)
457425.SSHG_05602(PF01197)
457425.SSHG_02408PF08213not used
457425.SSHG_03844(PF07555)
457425.SSHG_03826(PF14684)
457425.SSHG_04451(PF01197)
457425.SSHG_04452(PF03462)
457425.SSHG_04558(PF13816)
457425.SSHG_00258(PF10138)
457425.SSHG_02726PF16850
457425.SSHG_02138(PF09445)
457425.SSHG_02279(PF08530)
457425.SSHG_01501(PF03301)
457425.SSHG_00195(PF06999)
457425.SSHG_04065(PF03462)
457425.SSHG_02817(PF01839)
457425.SSHG_01549(PF14684)
457425.SSHG_03503(PF01839)
457425.SSHG_01492(PF13535)
457425.SSHG_00253(PF01197)
457425.SSHG_00068(PF03301)
457425.SSHG_03581(PF01756)
457425.SSHG_04446(PF03462)
457425.SSHG_04447(PF03462)
457425.SSHG_04448(PF01197)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================