Effective results for Citrobacter sp. 30_2 (eggnog40)

Summary

Number of putative secreted proteins: 735
- Predicted by EffectiveT3: 187 (high confidence), 307 (low confidence)
- Predicted by EffectiveCCBD: 34 within, 21 before, 56 behind expected region 25..70aa
- Predicted by T4SEpre: 123
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 68 proteins (0 high, 68 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
469595.CSAG_02066(PF00384) (PF01568)mitochondrial; (mitochondrial)
469595.CSAG_02067+(>)(mitochondrial); (plastid)
469595.CSAG_00401(PF00384) (PF01568)ER
469595.CSAG_00326(PF00384) (PF01568)(mitochondrial)
469595.CSAG_00998(PF00384) (PF01568)(mitochondrial)
469595.CSAG_01482++ER
469595.CSAG_01133(PF00384) (PF01568)mitochondrial; (mitochondrial)
469595.CSAG_01372+(>)(mitochondrial); plastid
469595.CSAG_01979+ER
469595.CSAG_02945(PF01116)(mitochondrial)
469595.CSAG_02671(<)(ER)
469595.CSAG_02454+ER
469595.CSAG_03615(>)ER
469595.CSAG_00768+ER
469595.CSAG_01095(>)ER
469595.CSAG_03828+(mitochondrial)
469595.CSAG_02688(PF03222)(ER)
469595.CSAG_01042+mitochondrial; (mitochondrial)
469595.CSAG_04067++
469595.CSAG_04061+ER
469595.CSAG_01159(>)ER
469595.CSAG_04087(>)(mitochondrial)
469595.CSAG_00143(PF05231)ER
469595.CSAG_04333(>)mitochondrial
469595.CSAG_02820(PF00939)ER
469595.CSAG_02959(PF03222)(ER); ER
469595.CSAG_04432(>)(mitochondrial)
469595.CSAG_02493+(mitochondrial)
469595.CSAG_03206+(ER)
469595.CSAG_00154(>)ER
469595.CSAG_01338(>)mitochondrial; (mitochondrial)
469595.CSAG_01930(PF05231)ER; (ER)
469595.CSAG_01064+ER; (ER)
469595.CSAG_01111(>)(ER)
469595.CSAG_02039+(ER); ER
469595.CSAG_02038+ER
469595.CSAG_03810(>)ER
469595.CSAG_02801(<)(ER)
469595.CSAG_02808+mitochondrial
469595.CSAG_03775+ER
469595.CSAG_03226+(PF08125) (PF01232)
469595.CSAG_04561(PF00939)ER
469595.CSAG_04562(+)(PF00939)ER
469595.CSAG_00532+ER
469595.CSAG_00538+ER
469595.CSAG_01866(PF10662)mitochondrial
469595.CSAG_00993+ER
469595.CSAG_02584+mitochondrial
469595.CSAG_03161(<)ER
469595.CSAG_03109+ER
469595.CSAG_01274+ER
469595.CSAG_01706(>)(mitochondrial); ER
469595.CSAG_02000(>)(mitochondrial)
469595.CSAG_02590+ER
469595.CSAG_04503+(mitochondrial)
469595.CSAG_01246+ER
469595.CSAG_01806+(ER)
469595.CSAG_04672+ER
469595.CSAG_02292(+)(PF05231)ER
469595.CSAG_02431+ER
469595.CSAG_03418+ER
469595.CSAG_00670(PF00384) (PF01568)(mitochondrial)
469595.CSAG_00811(>)mitochondrial
469595.CSAG_01653+ER
469595.CSAG_02282+ER
469595.CSAG_03887(PF05231)ER
469595.CSAG_03398(<)(mitochondrial)
469595.CSAG_03065+(mitochondrial)
469595.CSAG_04011(PF13391)mitochondrial
469595.CSAG_03263+(mitochondrial)
469595.CSAG_02867+(mitochondrial); (plastid)
469595.CSAG_01756(PF03222)ER
469595.CSAG_02233+ER
469595.CSAG_03351(<)ER
469595.CSAG_03658(>)ER
469595.CSAG_03655+ER
469595.CSAG_03899(>)(mitochondrial)
469595.CSAG_03091+(mitochondrial)
469595.CSAG_01525(<)ER
469595.CSAG_03799+(ER)
469595.CSAG_03485(>)ER
469595.CSAG_03863+ER
469595.CSAG_04576+(mitochondrial)
469595.CSAG_04452(>)ER
469595.CSAG_00220+ER
469595.CSAG_01176(>)ER
469595.CSAG_00409(PF00939)ER
469595.CSAG_03678+(mitochondrial); (plastid)
469595.CSAG_04446(PF00384)(mitochondrial); mitochondrial
469595.CSAG_04445(<)(PF00384) (PF01568)
469595.CSAG_03506+mitochondrial
469595.CSAG_00587(PF00939)ER
469595.CSAG_00478(>)ER
469595.CSAG_01388+(mitochondrial); mitochondrial
469595.CSAG_00242(>)ER
469595.CSAG_01167(>)ER
469595.CSAG_02862(PF00939)ER
469595.CSAG_03848(PF01116)(mitochondrial)
469595.CSAG_03605+ER
469595.CSAG_03028(>)ER
469595.CSAG_04052+ER
469595.CSAG_01678(>)ER
469595.CSAG_01227+ER; (ER)
469595.CSAG_01156(+)ER
469595.CSAG_01151+(plastid)
469595.CSAG_01405+(ER)
469595.CSAG_01573(PF00384) (PF01568)
469595.CSAG_02079(+)(ER)
469595.CSAG_03589+(ER)
469595.CSAG_04047+(mitochondrial)
469595.CSAG_01363(PF00384) (PF01568)
469595.CSAG_01143(+)(ER)
469595.CSAG_01568(PF00384) (PF01568)
469595.CSAG_01782++
469595.CSAG_01780+plastid
469595.CSAG_01786(+)ER; (ER)
469595.CSAG_02840(+)mitochondrial; (mitochondrial)
469595.CSAG_03820(+)ER
469595.CSAG_02919+(mitochondrial)
469595.CSAG_04530(PF00384) (PF01568)
469595.CSAG_00775+(plastid)
469595.CSAG_04339+(plastid)
469595.CSAG_01302(PF08125) (PF01232)
469595.CSAG_03795(+)(PF08125) (PF01232)
469595.CSAG_00246(+)(mitochondrial); (ER)
469595.CSAG_03573+(>)
469595.CSAG_03158(+)(ER)
469595.CSAG_02375(+)ER
469595.CSAG_00553(+)ER
469595.CSAG_00558++
469595.CSAG_01946(+)+(plastid)
469595.CSAG_00330(PF00384) (PF01568)
469595.CSAG_01233(PF05683) (PF05681)
469595.CSAG_02036(PF08125) (PF01232)
469595.CSAG_02032(PF00384) (PF01568)
469595.CSAG_03149(+)(mitochondrial)
469595.CSAG_00521(PF05034) (PF07476)
469595.CSAG_01695+plastid
469595.CSAG_03909+(mitochondrial)
469595.CSAG_03770(<)
469595.CSAG_02796(PF00384) (PF01568)
469595.CSAG_04186++
469595.CSAG_01919(+)(mitochondrial)
469595.CSAG_01467(+)ER; (ER)
469595.CSAG_01485+(>)
469595.CSAG_02160+(mitochondrial)
469595.CSAG_04443(+)(mitochondrial)
469595.CSAG_01270(PF00384) (PF01568)
469595.CSAG_01278(PF08125) (PF01232)
469595.CSAG_00878(+)mitochondrial
469595.CSAG_01875(PF00384) (PF01568)
469595.CSAG_03756(PF00384) (PF01568)
469595.CSAG_02297+(mitochondrial)
469595.CSAG_00516(PF05683) (PF05681)
469595.CSAG_04256++
469595.CSAG_00351(+)(ER)
469595.CSAG_02337+(ER)
469595.CSAG_01731+plastid
469595.CSAG_02922+(PF03222)
469595.CSAG_03526+(mitochondrial)
469595.CSAG_03256(PF08125) (PF01232)
469595.CSAG_04392++
469595.CSAG_04150+(mitochondrial)
469595.CSAG_03009+plastid
469595.CSAG_01251+(ER)
469595.CSAG_03649+mitochondrial
469595.CSAG_02420(>)+
469595.CSAG_04490(PF05683) (PF05681)
469595.CSAG_02125(PF00384) (PF01568)
469595.CSAG_02257(PF10662)(mitochondrial)
469595.CSAG_01630+(plastid)
469595.CSAG_03661(+)ER
469595.CSAG_02626(+)(mitochondrial)
469595.CSAG_02402+(mitochondrial)
469595.CSAG_02714(+)(ER)
469595.CSAG_00824+(mitochondrial)
469595.CSAG_00354(+)+(plastid)
469595.CSAG_01355(PF00384) (PF01568)
469595.CSAG_01356(PF00384)(plastid)
469595.CSAG_02479+(mitochondrial)
469595.CSAG_04593(PF01228)(mitochondrial)
469595.CSAG_00039(+)ER
469595.CSAG_01189+(mitochondrial)
469595.CSAG_02860+(PF05681)
469595.CSAG_02868+(mitochondrial)
469595.CSAG_04050+(mitochondrial)
469595.CSAG_03938(<)+
469595.CSAG_01971(+)(mitochondrial)
469595.CSAG_01150+
469595.CSAG_01578+
469595.CSAG_01088+
469595.CSAG_02981+
469595.CSAG_00972+
469595.CSAG_02235(>)
469595.CSAG_01794+
469595.CSAG_01797(+)(plastid)
469595.CSAG_01883+
469595.CSAG_02182+
469595.CSAG_02673(+)+
469595.CSAG_02677(+)(plastid)
469595.CSAG_02674+
469595.CSAG_03850+
469595.CSAG_02692+
469595.CSAG_04046+
469595.CSAG_04464(+)(plastid)
469595.CSAG_03875(+)plastid
469595.CSAG_03464+
469595.CSAG_00005+
469595.CSAG_04262+
469595.CSAG_00569+
469595.CSAG_04311+
469595.CSAG_00168+
469595.CSAG_01364(<)
469595.CSAG_00413(>)
469595.CSAG_02063+
469595.CSAG_02202+
469595.CSAG_02849+
469595.CSAG_00647+
469595.CSAG_02684(+)+
469595.CSAG_02441+
469595.CSAG_02442+
469595.CSAG_02443+
469595.CSAG_03625+
469595.CSAG_00344+
469595.CSAG_02531+
469595.CSAG_04071+
469595.CSAG_04076+
469595.CSAG_04521+
469595.CSAG_04095+
469595.CSAG_04099+
469595.CSAG_04098+
469595.CSAG_04242+
469595.CSAG_00778(+)+
469595.CSAG_01319(+)+
469595.CSAG_00797(+)(ER)
469595.CSAG_01951+
469595.CSAG_00400(>)
469595.CSAG_02052(+)(ER)
469595.CSAG_02453+
469595.CSAG_03108+
469595.CSAG_04447+not used
469595.CSAG_03101+
469595.CSAG_02303+
469595.CSAG_04485+
469595.CSAG_02941+
469595.CSAG_02944+
469595.CSAG_01174+
469595.CSAG_04665+
469595.CSAG_03016+
469595.CSAG_03013+
469595.CSAG_03495(+)(plastid)
469595.CSAG_04409+
469595.CSAG_04532+
469595.CSAG_04531(PF00384)
469595.CSAG_00546+
469595.CSAG_00350+
469595.CSAG_04088+
469595.CSAG_00090(<)
469595.CSAG_00062+
469595.CSAG_01124+
469595.CSAG_00324(>)
469595.CSAG_00898+
469595.CSAG_01543+
469595.CSAG_01053(+)(plastid)
469595.CSAG_03323+
469595.CSAG_03975(PF13391)
469595.CSAG_04436(+)+
469595.CSAG_04001+
469595.CSAG_00393+
469595.CSAG_03203(>)
469595.CSAG_02376(PF01228)
469595.CSAG_00086+
469595.CSAG_00084+
469595.CSAG_00150+
469595.CSAG_00153(+)(plastid)
469595.CSAG_04059+
469595.CSAG_00555+
469595.CSAG_00420+
469595.CSAG_00321(<)not used
469595.CSAG_01069+
469595.CSAG_01114+
469595.CSAG_01232(+)(<)
469595.CSAG_02811+
469595.CSAG_03818+
469595.CSAG_02814(>)
469595.CSAG_03812(PF06176)
469595.CSAG_02967(<)
469595.CSAG_02769+
469595.CSAG_03211+
469595.CSAG_03218(PF03222)
469595.CSAG_04517(+)+
469595.CSAG_04356+
469595.CSAG_03639+
469595.CSAG_00634+
469595.CSAG_00188+
469595.CSAG_00527(<)
469595.CSAG_03051+
469595.CSAG_00957(>)
469595.CSAG_04189+
469595.CSAG_00857+
469595.CSAG_01102+
469595.CSAG_04033(+)(ER)
469595.CSAG_02638+
469595.CSAG_03774+
469595.CSAG_02791(PF13391)
469595.CSAG_02793+
469595.CSAG_02047+
469595.CSAG_03177+
469595.CSAG_03991(<)
469595.CSAG_03996+
469595.CSAG_04185+
469595.CSAG_04363+
469595.CSAG_04163(+)plastid
469595.CSAG_04162+
469595.CSAG_02572+
469595.CSAG_01669+
469595.CSAG_00847+
469595.CSAG_01863(>)
469595.CSAG_01860(+)(plastid)
469595.CSAG_00996+
469595.CSAG_02165+
469595.CSAG_02011+
469595.CSAG_01567(<)
469595.CSAG_02747+
469595.CSAG_02743(PF01116)
469595.CSAG_04623(>)
469595.CSAG_02581(PF05231)
469595.CSAG_02587+
469595.CSAG_04195+
469595.CSAG_02977+
469595.CSAG_01180+
469595.CSAG_04282+
469595.CSAG_04289+
469595.CSAG_00974+
469595.CSAG_01649+
469595.CSAG_04201(+)(plastid)
469595.CSAG_00614(PF01228)
469595.CSAG_00500+
469595.CSAG_00507+
469595.CSAG_00504+
469595.CSAG_00271+
469595.CSAG_01909(>)
469595.CSAG_00872+
469595.CSAG_00879+
469595.CSAG_01877(+)(ER)
469595.CSAG_01015+
469595.CSAG_00470+
469595.CSAG_01475+
469595.CSAG_00479(+)(mitochondrial); not used
469595.CSAG_01707(+)(plastid)
469595.CSAG_02002+
469595.CSAG_02568+
469595.CSAG_03758(+)(>)
469595.CSAG_03247(+)(plastid)
469595.CSAG_04540(<)
469595.CSAG_04384+
469595.CSAG_04502+
469595.CSAG_00519(PF14330)
469595.CSAG_02952(+)(mitochondrial)
469595.CSAG_00265+
469595.CSAG_00867(>)
469595.CSAG_00461+
469595.CSAG_01737+
469595.CSAG_03116+
469595.CSAG_01026(PF01116)
469595.CSAG_00067+
469595.CSAG_02880+
469595.CSAG_02709+
469595.CSAG_02101+
469595.CSAG_02920(PF01228)
469595.CSAG_02927(+)(mitochondrial)
469595.CSAG_04609+
469595.CSAG_04607(>)
469595.CSAG_03742+
469595.CSAG_03746+
469595.CSAG_03749+
469595.CSAG_02437+
469595.CSAG_00995+
469595.CSAG_03253+
469595.CSAG_04550+
469595.CSAG_03002+
469595.CSAG_04158+
469595.CSAG_04078(+)+
469595.CSAG_00075+
469595.CSAG_04341+
469595.CSAG_00678(PF01228)
469595.CSAG_00387+
469595.CSAG_01250+
469595.CSAG_00819+
469595.CSAG_00817+
469595.CSAG_00813+
469595.CSAG_00010+
469595.CSAG_01768+
469595.CSAG_02609+
469595.CSAG_00725+
469595.CSAG_03882+
469595.CSAG_03733+
469595.CSAG_03392+
469595.CSAG_04121+
469595.CSAG_01683+
469595.CSAG_03844+
469595.CSAG_00716+
469595.CSAG_00662+
469595.CSAG_01297+
469595.CSAG_01829(>)
469595.CSAG_00482(>)
469595.CSAG_02631+
469595.CSAG_03722(>)
469595.CSAG_03893+
469595.CSAG_03474+
469595.CSAG_03077+
469595.CSAG_04006+
469595.CSAG_03272+
469595.CSAG_01442+
469595.CSAG_01354+
469595.CSAG_04227+
469595.CSAG_00235+
469595.CSAG_00123+
469595.CSAG_00831+
469595.CSAG_01637(<)
469595.CSAG_03348+
469595.CSAG_01744+
469595.CSAG_03860(>)
469595.CSAG_00465+
469595.CSAG_02400(+)+
469595.CSAG_04727+
469595.CSAG_01385+
469595.CSAG_04039+
469595.CSAG_04035+
469595.CSAG_04587+
469595.CSAG_03285+
469595.CSAG_04284+
469595.CSAG_02970+
469595.CSAG_04450(PF01116)
469595.CSAG_04106(>)
469595.CSAG_04572+
469595.CSAG_00389(+)(mitochondrial)
469595.CSAG_02716+not used
469595.CSAG_00131(>)
469595.CSAG_00134+
469595.CSAG_00825+
469595.CSAG_00820+
469595.CSAG_02891+
469595.CSAG_03057+
469595.CSAG_02398(>)
469595.CSAG_04345+
469595.CSAG_02366(>)
469595.CSAG_01142+
469595.CSAG_01635+
469595.CSAG_02563+
469595.CSAG_04343(+)(plastid)
469595.CSAG_04023+
469595.CSAG_04279(+)+
469595.CSAG_04111+
469595.CSAG_03318+
469595.CSAG_03040+
469595.CSAG_00036+
469595.CSAG_00035(>)
469595.CSAG_00034(>)
469595.CSAG_04271(>)
469595.CSAG_00360+
469595.CSAG_01618(<)
469595.CSAG_01188+
469595.CSAG_02884+
469595.CSAG_00962+
469595.CSAG_00053+
469595.CSAG_04617+
469595.CSAG_02080(+)+
469595.CSAG_00057+
469595.CSAG_03910+
469595.CSAG_04330+
469595.CSAG_02861(PF05683)
469595.CSAG_02643+
469595.CSAG_03847(PF01116)
469595.CSAG_02469+
469595.CSAG_03600+
469595.CSAG_02511+
469595.CSAG_02515(+)(>)
469595.CSAG_03025+
469595.CSAG_04051+
469595.CSAG_03334+
469595.CSAG_01520+
469595.CSAG_00195(>)
469595.CSAG_01373+
469595.CSAG_00116(<)
469595.CSAG_00688(+)+
469595.CSAG_00378+
469595.CSAG_00218+
469595.CSAG_03331+
469595.CSAG_01974(+)
469595.CSAG_01575(+)
469595.CSAG_02230(+)
469595.CSAG_02077(+)
469595.CSAG_01792(+)
469595.CSAG_01882(+)
469595.CSAG_02185(+)
469595.CSAG_02852(+)
469595.CSAG_03853(+)
469595.CSAG_03856(+)
469595.CSAG_02457(+)
469595.CSAG_01476(+)
469595.CSAG_04045(+)
469595.CSAG_04048(+)
469595.CSAG_03929(+)
469595.CSAG_03927(+)
469595.CSAG_00007(+)
469595.CSAG_04269(+)
469595.CSAG_04265(+)
469595.CSAG_04260(+)
469595.CSAG_00564(+)
469595.CSAG_00304(+)
469595.CSAG_01368(+)
469595.CSAG_00784(+)
469595.CSAG_00187(+)
469595.CSAG_01563(+)
469595.CSAG_01569(+)
469595.CSAG_01092(+)
469595.CSAG_01098(+)
469595.CSAG_02996(+)
469595.CSAG_02194(+)
469595.CSAG_02842(+)
469595.CSAG_04677(+)
469595.CSAG_03559(+)
469595.CSAG_04529(+)
469595.CSAG_01923(+)
469595.CSAG_02367(+)
469595.CSAG_00570(+)
469595.CSAG_01950(+)
469595.CSAG_00951(+)
469595.CSAG_01426(+)
469595.CSAG_02832(+)
469595.CSAG_03834(+)
469595.CSAG_01582(+)
469595.CSAG_02653(+)
469595.CSAG_02948(+)
469595.CSAG_03543(+)
469595.CSAG_03125(+)
469595.CSAG_03943(+)
469595.CSAG_04084(+)
469595.CSAG_00097(+)
469595.CSAG_00544(+)
469595.CSAG_02159(+)
469595.CSAG_01772(+)
469595.CSAG_00751(+)
469595.CSAG_03804(+)
469595.CSAG_02228(+)
469595.CSAG_02629(+)
469595.CSAG_00085(+)
469595.CSAG_02873(+)
469595.CSAG_00552(+)
469595.CSAG_00884(+)
469595.CSAG_01597(+)
469595.CSAG_01598(+)
469595.CSAG_04308(+)not used
469595.CSAG_03781(+)
469595.CSAG_02496(+)
469595.CSAG_02966(+)
469595.CSAG_02963(+)
469595.CSAG_02782(+)
469595.CSAG_00891(+)
469595.CSAG_00890(+)
469595.CSAG_03966(+)
469595.CSAG_03962(+)
469595.CSAG_03367(+)
469595.CSAG_04422(+)
469595.CSAG_04515(+)
469595.CSAG_04358(+)
469595.CSAG_04351(+)
469595.CSAG_01323(+)
469595.CSAG_01213(+)
469595.CSAG_00856(+)
469595.CSAG_01079(+)not used
469595.CSAG_01077(+)
469595.CSAG_01101(+)
469595.CSAG_01103(+)
469595.CSAG_01458(+)
469595.CSAG_02029(+)
469595.CSAG_02379(+)
469595.CSAG_02797(+)
469595.CSAG_02776(+)
469595.CSAG_03681(+)
469595.CSAG_04633(+)
469595.CSAG_03995(+)
469595.CSAG_01643(+)
469595.CSAG_00707(+)
469595.CSAG_04292(+)
469595.CSAG_04366(+)
469595.CSAG_00537(+)
469595.CSAG_00443(+)
469595.CSAG_00846(+)
469595.CSAG_01007(+)
469595.CSAG_00412(+)
469595.CSAG_00944(+)
469595.CSAG_02482(+)
469595.CSAG_03693(+)
469595.CSAG_02341(+)
469595.CSAG_02340(+)
469595.CSAG_04194(+)
469595.CSAG_04578(+)
469595.CSAG_03232(+)
469595.CSAG_04374(+)
469595.CSAG_04178(+)
469595.CSAG_00610(+)
469595.CSAG_00503(+)
469595.CSAG_00293(+)
469595.CSAG_00291(+)
469595.CSAG_01277(+)
469595.CSAG_01874(+)
469595.CSAG_00473(+)
469595.CSAG_03726(+)
469595.CSAG_02914(+)
469595.CSAG_02755(+)
469595.CSAG_02757(+)
469595.CSAG_02591(+)
469595.CSAG_02594(+)
469595.CSAG_00663(+)
469595.CSAG_03403(+)
469595.CSAG_02890(+)
469595.CSAG_03720(+)
469595.CSAG_03241(+)
469595.CSAG_04541(+)
469595.CSAG_04549(+)
469595.CSAG_00170(+)
469595.CSAG_04380(+)
469595.CSAG_01826(+)
469595.CSAG_02924(+)
469595.CSAG_01610(+)
469595.CSAG_00263(+)
469595.CSAG_02444(+)
469595.CSAG_01240(+)
469595.CSAG_02611(+)
469595.CSAG_02610(+)
469595.CSAG_02729(+)
469595.CSAG_02728(+)
469595.CSAG_02723(+)
469595.CSAG_03741(+)
469595.CSAG_02434(+)
469595.CSAG_03524(+)
469595.CSAG_01692(+)
469595.CSAG_03254(+)
469595.CSAG_02536(+)
469595.CSAG_04159(+)
469595.CSAG_04153(+)
469595.CSAG_00074(+)
469595.CSAG_00070(+)
469595.CSAG_00046(+)
469595.CSAG_00677(+)
469595.CSAG_01256(+)
469595.CSAG_01650(+)
469595.CSAG_03001(+)
469595.CSAG_01721(+)
469595.CSAG_02946(+)
469595.CSAG_03646(+)
469595.CSAG_00557(+)
469595.CSAG_02427(+)
469595.CSAG_04700(+)
469595.CSAG_03399(+)
469595.CSAG_03088(+)
469595.CSAG_03067(+)
469595.CSAG_03066(+)
469595.CSAG_03262(+)
469595.CSAG_03269(+)
469595.CSAG_04252(+)
469595.CSAG_00346(+)
469595.CSAG_00392(+)
469595.CSAG_01282(+)
469595.CSAG_01280(+)
469595.CSAG_01531(+)
469595.CSAG_00483(+)
469595.CSAG_00481(+)
469595.CSAG_00933(+)
469595.CSAG_02128(+)
469595.CSAG_04627(+)
469595.CSAG_02521(+)
469595.CSAG_04717(+)
469595.CSAG_01846(+)
469595.CSAG_03093(+)
469595.CSAG_04134(+)
469595.CSAG_04692(+)
469595.CSAG_04699(+)
469595.CSAG_01292(+)
469595.CSAG_02247(+)
469595.CSAG_03719(+)
469595.CSAG_03861(+)
469595.CSAG_03862(+)
469595.CSAG_04723(+)
469595.CSAG_02236(+)
469595.CSAG_04470(+)
469595.CSAG_04032(+)
469595.CSAG_03288(+)
469595.CSAG_04586(+)
469595.CSAG_04582(+)
469595.CSAG_04104(+)
469595.CSAG_02518(+)
469595.CSAG_04575(+)
469595.CSAG_00388(+)
469595.CSAG_00008(+)
469595.CSAG_00224(+)
469595.CSAG_00139(+)
469595.CSAG_01262(+)
469595.CSAG_00130(+)
469595.CSAG_00135(+)
469595.CSAG_00128(+)
469595.CSAG_01994(+)
469595.CSAG_02364(+)
469595.CSAG_02094(+)
469595.CSAG_01551(+)
469595.CSAG_02877(+)
469595.CSAG_02564(+)
469595.CSAG_04024(+)
469595.CSAG_04026(+)
469595.CSAG_04270(+)not used
469595.CSAG_04208(+)
469595.CSAG_04209(+)
469595.CSAG_00583(+)
469595.CSAG_00102(+)
469595.CSAG_01619(+)
469595.CSAG_02888(+)
469595.CSAG_01981(+)
469595.CSAG_01163(+)
469595.CSAG_00243(+)
469595.CSAG_01603(+)
469595.CSAG_01134(+)
469595.CSAG_00186(+)
469595.CSAG_02466(+)
469595.CSAG_02467(+)
469595.CSAG_03939(+)
469595.CSAG_00029(+)
469595.CSAG_00592(+)
469595.CSAG_00598(+)
469595.CSAG_00110(+)
469595.CSAG_00113(+)
469595.CSAG_00117(+)
469595.CSAG_00683(+)
469595.CSAG_00376(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.3 (3/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.7 (7/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================