Effective results for unidentified eubacterium SCB49 (eggnog40)

Summary

Number of putative secreted proteins: 66
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 66 proteins (13 high, 53 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
50743.SCB49_13900				(PF02128) PF02494	ER
50743.SCB49_07252				(PF02128)	ER
50743.SCB49_11262				PF14240	ER
50743.SCB49_11287				PF14240	ER; (ER)
50743.SCB49_08888				(PF01610)	(mitochondrial)
50743.SCB49_06527				(PF14312)	ER
50743.SCB49_10972				PF02494	ER
50743.SCB49_09660				PF02494	ER
50743.SCB49_01042				PF02494	ER
50743.SCB49_10362				PF14240	ER
50743.SCB49_06662				PF14240	ER
50743.SCB49_11172				(PF14312)	(ER); ER
50743.SCB49_02744				(PF03162)	ER
50743.SCB49_03234				(PF13455)	(mitochondrial)
50743.SCB49_08067				(PF00386)	ER
50743.SCB49_05767				(PF09113)	ER
50743.SCB49_10107				PF02494	ER
50743.SCB49_10137				(PF15902)	(ER); ER
50743.SCB49_05520				PF02494	ER
50743.SCB49_06082				(PF03321)	(mitochondrial)
50743.SCB49_04930				(PF15902)	ER
50743.SCB49_05465				PF02494	ER
50743.SCB49_12179				(PF09834)	mitochondrial
50743.SCB49_11112				(PF00036)	ER
50743.SCB49_07842				(PF03321)	(plastid)
50743.SCB49_14675				(PF02371)	(mitochondrial)
50743.SCB49_13930				(PF07766)	(ER)
50743.SCB49_02429				(PF11074)	(mitochondrial)
50743.SCB49_06732				(PF01541)
50743.SCB49_14740				(PF02371)
50743.SCB49_01772				(PF01610)
50743.SCB49_01777				(PF01610)
50743.SCB49_09935				(PF01610)
50743.SCB49_07487				(PF08695)
50743.SCB49_09940				(PF01610)
50743.SCB49_14640				(PF02371)	not used
50743.SCB49_01762				(PF01610)
50743.SCB49_08428				(PF01541)
50743.SCB49_09925				(PF01610)
50743.SCB49_03709				(PF01610)
50743.SCB49_03169				(PF02371)
50743.SCB49_14700				(PF02371)
50743.SCB49_00400				(PF01541)
50743.SCB49_08878				(PF01610)
50743.SCB49_11187				(PF14312)	not used
50743.SCB49_10477				(PF02371)
50743.SCB49_09020				(PF10504)
50743.SCB49_08077				(PF01541)
50743.SCB49_08072				(PF01541)
50743.SCB49_00847				(PF01541)
50743.SCB49_00385				(PF01541)
50743.SCB49_11302				PF14240
50743.SCB49_00395				(PF01541)
50743.SCB49_00390				(PF01541)
50743.SCB49_13875				(PF15902)
50743.SCB49_10062				(PF05686)
50743.SCB49_01297				(PF02371)
50743.SCB49_03109				(PF02371)
50743.SCB49_14760				(PF02371)
50743.SCB49_12129				(PF09834)
50743.SCB49_03134				(PF02371)
50743.SCB49_03139				(PF02371)
50743.SCB49_11487				(PF01541)
50743.SCB49_14190				(PF03321)
50743.SCB49_10045				PF15711
50743.SCB49_01747				(PF01610)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================