Effective results for Chlorobaculum parvum NCIB 8327 (eggnog40)

Summary

Number of putative secreted proteins: 20
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 20 proteins (1 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
517417.Cpar_0788(PF01875)ER
517417.Cpar_0269(PF02374)(mitochondrial); mitochondrial
517417.Cpar_0273(PF02374)mitochondrial
517417.Cpar_1942(PF02374)(mitochondrial); mitochondrial
517417.Cpar_0060(PF02374)(mitochondrial)
517417.Cpar_1234(PF14701)ER
517417.Cpar_1231(PF02374)(mitochondrial)
517417.Cpar_0020(PF12159) (PF10693)
517417.Cpar_1688(PF02374)
517417.Cpar_0068(PF09366)
517417.Cpar_1819(PF04765)
517417.Cpar_0262(PF11965)
517417.Cpar_0260(PF11965)
517417.Cpar_1900(PF01875)
517417.Cpar_1008(PF16114)
517417.Cpar_1926(PF09366)
517417.Cpar_0728(PF11965)
517417.Cpar_1606(PF08547)
517417.Cpar_1952(PF08547)
517417.Cpar_0599PF04981

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================