Effective results for Citromicrobium sp. JLT1363 (eggnog40)

Summary

Number of putative secreted proteins: 20
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 20 proteins (0 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
517722.CJLT1_010100002335(PF15780) (PF12733)ER
517722.CJLT1_010100006830(PF01746)ER
517722.CJLT1_010100001445(PF00135)(ER)
517722.CJLT1_010100012378(PF11918)ER
517722.CJLT1_010100010061(PF06455)ER
517722.CJLT1_010100001315(PF00135)mitochondrial
517722.CJLT1_010100001325(PF00135)ER
517722.CJLT1_010100005670(PF00135)ER
517722.CJLT1_010100001375(PF00135)ER
517722.CJLT1_010100005690(PF00135)ER
517722.CJLT1_010100013726(PF05019)(plastid)
517722.CJLT1_010100015128(PF15780) (PF12733)
517722.CJLT1_010100001330(PF00135)
517722.CJLT1_010100012656(PF12733)not used
517722.CJLT1_010100011076(PF05019)
517722.CJLT1_010100012661(PF12733)
517722.CJLT1_010100003682(PF02933)
517722.CJLT1_010100001365(PF00135)
517722.CJLT1_010100005090(PF10013)not used
517722.CJLT1_010100011363(PF01746)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================