Effective results for Rhodothermus marinus DSM 4252 (eggnog40)

Summary

Number of putative secreted proteins: 67
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 67 proteins (5 high, 62 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
518766.Rmar_0260(PF02012) (PF13860)ER
518766.Rmar_1530(PF07721)ER
518766.Rmar_2092(PF04253)ER
518766.Rmar_1760(PF07593)ER
518766.Rmar_2053(PF13582)ER
518766.Rmar_1484(PF13860)ER
518766.Rmar_1165(PF14592)ER
518766.Rmar_1747(PF07593)ER
518766.Rmar_1004(PF00094)(mitochondrial)
518766.Rmar_1759(PF07593)ER
518766.Rmar_1751(PF07593)ER
518766.Rmar_1753(PF07593)ER
518766.Rmar_1752(PF07721)ER
518766.Rmar_0524(PF13860)ER
518766.Rmar_1437(PF07721)ER
518766.Rmar_1438(PF07593)ER
518766.Rmar_2471(PF13860)ER
518766.Rmar_2495(PF01909)(mitochondrial)
518766.Rmar_1428(PF07593)ER
518766.Rmar_0721(PF13860)ER
518766.Rmar_1386(PF14592)ER
518766.Rmar_0099(PF13582)ER
518766.Rmar_2727(PF13860)ER
518766.Rmar_0910(PF02012)ER
518766.Rmar_0449(PF13528)mitochondrial
518766.Rmar_1403(PF12038)(mitochondrial); (plastid)
518766.Rmar_0119(PF01204)ER
518766.Rmar_1071(PF13860)ER
518766.Rmar_1988(PF01927)(mitochondrial)
518766.Rmar_2017(PF01909)(mitochondrial)
518766.Rmar_1999(PF01909)
518766.Rmar_0131(PF07798)
518766.Rmar_0551(PF01909)
518766.Rmar_0557PF00261
518766.Rmar_2571(PF01909)
518766.Rmar_0548(PF01909)
518766.Rmar_2563(PF13528)
518766.Rmar_2147(PF01909)
518766.Rmar_1814(PF07798)
518766.Rmar_0782(PF13860)
518766.Rmar_1563(PF01909)
518766.Rmar_1766(PF01909)
518766.Rmar_1646(PF01909)
518766.Rmar_0363(PF04041)
518766.Rmar_0362(PF04041)
518766.Rmar_1772(PF01927)
518766.Rmar_1774(PF01204)
518766.Rmar_0191(PF11969)
518766.Rmar_0503(PF01204)
518766.Rmar_0502PF09488
518766.Rmar_2440(PF04041)
518766.Rmar_0239(PF05189)
518766.Rmar_2074(PF12640)
518766.Rmar_2669(PF01909)
518766.Rmar_2475PF16575
518766.Rmar_1731PF04184
518766.Rmar_2647(PF03959)
518766.Rmar_2734(PF01909)
518766.Rmar_1257(PF04423)
518766.Rmar_1713(PF02679)
518766.Rmar_1394PF08961
518766.Rmar_2527(PF04098)
518766.Rmar_0022(PF02679)
518766.Rmar_2515(PF01927)
518766.Rmar_1188(PF01909)
518766.Rmar_2615(PF04041)
518766.Rmar_2614(PF04041)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================