Effective results for Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 (eggnog40)

Summary

Number of putative secreted proteins: 17
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 17 proteins (2 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
525146.Ddes_0350PF01591mitochondrial; (mitochondrial)
525146.Ddes_0746(PF02516)
525146.Ddes_1593(PF12437)
525146.Ddes_0152(PF01597)
525146.Ddes_1301(PF06968)
525146.Ddes_1412(PF05935)
525146.Ddes_1946(PF06968)
525146.Ddes_1417(PF01597)
525146.Ddes_0145PF13513
525146.Ddes_0787(PF01597)
525146.Ddes_1149(PF12437)
525146.Ddes_2167(PF06968)
525146.Ddes_2348(PF01597)
525146.Ddes_0468(PF05693)
525146.Ddes_1505(PF06968)
525146.Ddes_2093(PF05935)
525146.Ddes_2074(PF09825)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================