Effective results for Corynebacterium lipophiloflavum DSM 44291 (eggnog40)

Summary

Number of putative secreted proteins: 28
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 28 proteins (1 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
525263.HMPREF0298_0923(PF03596)ER
525263.HMPREF0298_0063(PF03275)(ER)
525263.HMPREF0298_1811(PF00872)(mitochondrial)
525263.HMPREF0298_0533(PF01195)(mitochondrial)
525263.HMPREF0298_1711(PF00872)(mitochondrial)
525263.HMPREF0298_0529(PF01195)(plastid)
525263.HMPREF0298_2283(PF11625)
525263.HMPREF0298_0757(PF02224)
525263.HMPREF0298_1712(PF00872)not used
525263.HMPREF0298_0929(PF00872)not used
525263.HMPREF0298_2064PF08213not used
525263.HMPREF0298_0937(PF00872)
525263.HMPREF0298_0079(PF03275)not used
525263.HMPREF0298_0669(PF00872)not used
525263.HMPREF0298_1051(PF04760)
525263.HMPREF0298_1636(PF02224)
525263.HMPREF0298_1812(PF00872)
525263.HMPREF0298_2370(PF00872)
525263.HMPREF0298_0828(PF00872)
525263.HMPREF0298_1710(PF00872)not used
525263.HMPREF0298_1365(PF04760)
525263.HMPREF0298_1366(PF04760)not used
525263.HMPREF0298_2294(PF00872)
525263.HMPREF0298_2296(PF03596)
525263.HMPREF0298_2292(PF11625)
525263.HMPREF0298_1654(PF00872)not used
525263.HMPREF0298_1657(PF00872)
525263.HMPREF0298_1656(PF03275)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================