Effective results for Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 (eggnog40)

Summary

Number of putative secreted proteins: 28
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 28 proteins (10 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
547043.BIFPSEUDO_04063(PF12051)mitochondrial
547043.BIFPSEUDO_04128(PF12051)(mitochondrial)
547043.BIFPSEUDO_04138(PF03629)ER
547043.BIFPSEUDO_03321(PF00686)mitochondrial
547043.BIFPSEUDO_03811(PF06541)ER
547043.BIFPSEUDO_03810(PF06541)(mitochondrial)
547043.BIFPSEUDO_03311(PF00686)(mitochondrial)
547043.BIFPSEUDO_04489PF08719not used
547043.BIFPSEUDO_04481PF13151
547043.BIFPSEUDO_04480PF08719not used
547043.BIFPSEUDO_04483PF08719
547043.BIFPSEUDO_02712(PF08354)
547043.BIFPSEUDO_04129(PF06541)
547043.BIFPSEUDO_02694(PF03051)
547043.BIFPSEUDO_03678(PF03051)
547043.BIFPSEUDO_03267(PF05704)
547043.BIFPSEUDO_03864(PF03051)
547043.BIFPSEUDO_02491(PF03629)
547043.BIFPSEUDO_04089(PF03629)
547043.BIFPSEUDO_02469(PF03629)
547043.BIFPSEUDO_04451PF08719not used
547043.BIFPSEUDO_03729(PF01704)
547043.BIFPSEUDO_03728(PF01704)
547043.BIFPSEUDO_02584PF08213not used
547043.BIFPSEUDO_03405PF08719
547043.BIFPSEUDO_03407PF13151
547043.BIFPSEUDO_03403PF13151not used
547043.BIFPSEUDO_04477PF13151

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================