Effective results for Zymomonas mobilis subsp. mobilis ATCC 10988 (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 4 eukaryotic-like domains, contained in 31 proteins (0 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
555217.Zmob_0399(PF10435) (PF13363)ER
555217.Zmob_1221(PF08238)ER
555217.Zmob_0693(PF08238)ER
555217.Zmob_0692(PF08238)ER
555217.Zmob_0697(PF08238)ER
555217.Zmob_0696(PF08238)ER
555217.Zmob_0695(PF08238)ER
555217.Zmob_0694(PF08238)ER
555217.Zmob_0699(PF08238)ER
555217.Zmob_0698(PF08238)(ER); plastid
555217.Zmob_0774(PF08238)ER; (mitochondrial)
555217.Zmob_0777(PF08238)ER
555217.Zmob_0762(PF08238)ER
555217.Zmob_0752(PF08238)ER
555217.Zmob_1339(PF01609)
555217.Zmob_0780(PF01609)
555217.Zmob_1224(PF01609)
555217.Zmob_1255(PF01609)
555217.Zmob_1101(PF01609)
555217.Zmob_1248(PF01609)
555217.Zmob_0197(PF01609)
555217.Zmob_0624(PF01609)
555217.Zmob_1462(PF01609)
555217.Zmob_0082(PF01609)
555217.Zmob_0099(PF01609)
555217.Zmob_1444(PF01609)
555217.Zmob_1175(PF01609)
555217.Zmob_0827(PF01609)
555217.Zmob_1411(PF01609)
555217.Zmob_0904(PF01609)
555217.Zmob_1573(PF01609)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================